A directory of core research facilities, services, and instrumentation in Rhode Island

Core Facilities

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Thermo 253 Plus/Clumped-enabled Kiel IV Isotope Ratio Mass Spectrometry Facility

(last updated 2024-02-28 15:41:30)
»See Thermo 253 Plus/Clumped-enabled Kiel IV Isotope Ratio Mass Spectrometry Facility website for more details

Contact: Steven Clemens

Location: Geological Sciences  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Mass Spectrometer, Isotope Ratio
Contact: Steven Clemens, Daniel Ibarra
https://sites.brown.edu/mat235-mass-spectrometry/
ThermoFisher (Finnigan) 253+ dual inlet Isotope Ratio Mass Spectrometer with automated sample reaction device for up to 48 samples and with Kiel IV Carbonate interface and PoraPak purification trap.Instrument primarily dedicated to the measurement of the stable isotopes of carbon and oxygen on inorganic carbonates as well as clumped oxygen isotopes. The facility accommodates projects both internal and external to Brown including analysis of terrestrial and marine material. The vast majority of samples analyzed are funded through external grants but we also facilitate a significant number of small unfunded, exploratory, analyses to help construct proof-of-concept data sets in preparation for proposals.

Advance RI-CTR

(last updated 2024-02-28 15:38:44)
»See Advance RI-CTR website for more details

Contact: Patricia Coulter

Location: Advance-CTR Headquarters  »See on the Map

Affiliated Centers: IDeA Advance RI-CTR (Clinical Translational Research) at Brown University

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Administration Advance-CTR
Contact:
Research Resources
Request a Service
Clinical Research Service, Advance-CTR Service CoordinationAdvance-CTR works to support researchers at the state level by developing the infrastructure and resources investigators need to conduct clinical and translational research in Rhode Island. Through its interdisciplinary and inter-institutional model, Advance-CTR funds and supports research across the translational science spectrum, including basic science, clinical, and public health efforts. Ultimately, Advance-CTR seeks to connect researchers and support institutions in Rhode Island in order to advance clinical and translational research that improves public health in the state.
Research - Biostatistical Consulting, Epidemiology & Clinical Research Design Services
Contact: Heather Fournier
Biostatistical Consulting, Epidemiology & Clinical Research Design Services Webpage
Request a Service
Clinical Research Service, Advance-CTR A team of experienced statisticians and methodological experts are on-hand to help investigators prepare their proposals pre-award, and plan their projects upon receipt of funding. Pre-award services include, positioning of specific aims and hypotheses, measure selection, power analysis and data analysis planning. Post-award services include decision support services, data acquisition and management and consultations to assess the impact of potential design changes on final statistical influence. Data analysis and results interpretation services include implementing data analysis plans, statistical analysis consultations, selecting and accessing statistical analysis software, and coaching to best utilize statistical analysis software. Manuscript and grant proposal writing services include assistance with write-ups, data visualizations, integration of interpretations in the broader context of the project, and addressing comments from peer reviewers.
Research - Biomedical Informatics Services
Contact: Heather Fournier
Biomedical Informatics Services Webpage
Request a Service
Clinical Research Service, Advance-CTR Researchers may request, access, and use data available through the Unified Research data Sharing Access (URSA) infrastructure. The data include information originating from electronic health data systems at Lifespan, Care New England, and the Rhode Island Quality Institute, as well as from publicly accessible biological and health data sets.
Research - Qualitative Methods Services
Contact: Heather Fournier
Qualitative Services Webpage
Request a Service
Clinical Research Service, Advance-CTRThis service provides qualitative and mixed methods and data analysis design research support. Qualitative and mixed methods support includes; study design and preparation, original measure development, coaching on qualitative methods design decisions (focus groups, interviews, cognitive interviews), NVivo qualitative software training, help with grant writing of qualitative methods and analysis sections, manuscript and grant proposal review, post interview/focus group debriefing. Data analysis design support includes applied thematic analysis and framework matrix analysis.
Research - Community Engagement & Outreach Core
Community Engagement & Outreach Core
Request a Service
Clinical Research Service, Advance-CTR The CEO Core helps facilitate research endeavors that are relevant, accessible, and impactful to the entire state of Rhode Island.

Alzheimer's Disease and Memory Disorders Center

(last updated 2023-03-17 13:31:46)
»See Alzheimer's Disease and Memory Disorders Center website for more details

Contact: Jonathan Drake, MD

Location: Rhode Island Hospital, Ambulatory Patient Center (APC Building)  »See on the Map

Affiliated Centers: Alzheimer's Disease & Memory Disorders Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Research - Alzheimer's Disease & Memory Disorders Center
Contact: Alzheimer's Disease and Memory Disorders Center
Clinical Research Resources, Alzheimer'sThe Rhode Island Hospital’s Alzheimer's Disease and Memory Disorders Center (ADMDC) provides a comprehensive and integrated program of research and education focused on brain aging and dementia. The ADMDC participates in multicenter clinical trials of investigational drugs to prevent or treat the symptoms of Alzheimer’s Disease and is a primary site for studies sponsored by the Alzheimer's Disease Cooperative Study, funded by the National Institutes of Health, and the Alzheimer's Therapeutic Research Institute. Investigator-initiated studies are an important component of the ADMDC’s research activities; the Center is currently conducting innovative clinical trials for cognitively impaired older drivers and mind-body intervention, as well as studies of the roles of neuroimaging, biologic, and cognitive biomarkers in understanding the preclinical and prodromal stages of Alzheimer's disease. A major thrust of current and future dementia research is primary and secondary prevention. The ADMDC is the primary site for the Rhode Island Alzheimer Prevention Registry, a statewide project that enrolls individuals interested in Alzheimer’s disease prevention trials. To further research into the pathology of Alzheimer’s disease and related dementias, the Center supports the brain donation program at the Brown Brain Tissue Resource Center and operates the Biospecimen Bank, a repository for blood and cerebrospinal fluid specimens stored for future collaborative translational research projects. Intra- and inter-institutional research collaborations are a vital part of the ADMDC’s work. The Center hosts a monthly research seminar co-sponsored by the Norman Prince Neurosciences Institute, which provides a forum for aging and dementia researchers to discuss current research and plan future projects.

Animal Models Core

(last updated 2023-07-07 10:56:19)
»See Animal Models Core website for more details

Contact: Gerard Nau, MD

Location: Aldrich Building Room 723 The Miriam Hospital

Affiliated Centers: IDeA COBRE Center for Antimicrobial Resistance and Therapeutic Discovery (CARTD) at Miriam Hospital

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Support for in-vivo experimentsServicePersonnel available to assist with planning and executing BSL1 and BSL2 animal experiments with an emphasis on blinding treatments and/or assessments to enhance robustness.
Imaging System - fluorescent and bioluminescentPerkinElmer IVIS Lumina III in vivo imaging systemThe IVIS Lumina III is capable of imaging both fluorescent and bioluminescent reporters. The system is equipped with up to 26 filter sets that can be used to image reporters that emit from green to near-infrared. Superior spectral unmixing can be achieved by Lumina III’s optional high resolution short cut off filters.
Molecular Devices Spectramax i3X
Contact: Gerard Nau
COBRE CARTD
Request a Service
Molecular DevicesThe spectramax i3X has the ability to measure absorbance, fluorescence, and luminescence. Additional features such as injectors facilitate flash based applications including dual luciferase and ATP assays.
Flow CytometerAmnis CellStream Luminex Flow CytometerThe CellStream flow cytometer has single tube and 96 well plate capabilities with automatic compensation. Equipped with 405nm, 488nm, 532nm, and 642nm lasers and 16 fluorescent channels. Handles BSL-1 and fixed samples from BSL-2 experiments.
Liquid nitrogen storage CBS Cryosystems 4000 SeriesCBS cryosystems 4000 series liquid nitrogen freezer for eukaryotic cell storage.
PCR Thermal Cycler - Real-Time Detection SystemBio-Rad CFX Connect Real-Time PCR Detection SystemCFX Connect Real-Time PCR System for two-target multiplex PCR and routine detection of single fluorophore experiments.
Neutralization assayServiceLuciferase-based assay used to measure the neutralization properties of serum, plasma, or monoclonal antibodies against SARS-CoV-2 based on a pseudotyped lentivirus.
PCR Thermal Cycler - Droplet DigitalBio-Rad QX200 Droplet Digital PCR SystemAbsolute quantification of target DNA or RNA molecules using EvaGreen or probe-based digital PCR applications. Flexible platform in groups of 8 with no standard curves necessary.
Microplate ReaderMolecular Devices Spectramax i3XThe Spectramax i3X has the ability to measure absorbance, fluorescence, and luminescence. Additional features include fluorescence polarization and time-resolved fluorescence, along with injectors that facilitate flash based applications including dual luciferase and ATP assays.
Biospecimen Banking - Freezer - -80 degreesPHCbiPHCbi TwinGuard Series upright -80°C freezer for sample storage. Two independent refrigeration systems provides redundancy for sample protection.

Behavior and Neuroimaging Core

(last updated 2022-04-12 08:52:48)
»See Behavior and Neuroimaging Core website for more details

Contact: Michael Worden

Affiliated Centers: Carney Institute for Brain Science, IDeA COBRE Center for Central Nervous System Function at Brown University

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Training and Technical Assistance - SupportClinical Research Resources, Behavior and NeuroimagingThe mission of the Behavior and Neuroimaging Core (BNC) is to provide a coherent set of resources that will facilitate the implementation of each of the COBRE Project Leader’s research aims. The BNC provides ongoing support, training, assistance and advice to COBRE project leaders in the practical aspects of data collection, data management and data processing across a wide variety of neuroscience related methodologies. The BNC also serves as a resource to the broader neuroscience community at Brown and its affiliated hospitals and the broader Rhode Island academic community by providing formal and informal training, accessible data processing pipelines, and documentation of these and related resources. The support provided by the BNC is distinct from but complementary to services provided by the Design and Analysis Core (DAC). Whereas the DAC is focused primarily on study design, analytical modeling, and techniques for inference, the focus of the BNC is on practical aspects of research conduct such as efficient and high-quality data acquisition, implementation and deployment of standard and newly developed tools for analysis of large neuroimaging datasets, and lowering barriers to the use of such tools through direct assistance, training and documentation. Because the missions of the BNC and DAC are highly complementary, the effectiveness of each core is strengthened by collaborative relationships between them. The analytical techniques developed by the DAC in partnership with the Project Leaders are predicated upon robust high-quality data. Similarly, realization of study design principles requires practical expertise with the tools necessary to implement those principles. The BNC and DAC will share a full-time staff member with expertise in research design, statistical modeling, data management and high-performance computing.
Training and Technical Assistance - Facilitate Experimental ImplementationsClinical Research Resources, Behavior and NeuroimagingControl experiments, Eye tracking, EEG guidance
Training and Technical Assistance - MRI AssistanceClinical Research Resources, Behavior and NeuroimagingDesign of experiments, Analysis pipelines, EEG in the MRI scanner, Timing verification
Data Storage - Generalized SolutionsClinical Research Resources, Behavior and NeuroimagingxNAT database, Containers for data presentation, Beyond the desktop with VMs
Training and Technical Assistance - High Performance Computing (HPC)Clinical Research Resources, Behavior and NeuroimagingAssistance with High Performance Computing (HPC)

BioBank, BrainTissue

(last updated 2022-03-18 11:02:20)
»See BioBank, BrainTissue website for more details

Contact: Ivana Delalle, MD, PhD

Location: Rhode Island Hospital Ambulatory Patient Center (APC) 12  »See on the Map

Affiliated Centers: Alzheimer's Disease & Memory Disorders Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
BioBank - Brain Tissue Resource CenterClinical Research Resources, Brain Tissues A brain tissue resource center (BTRC) (often referred to as a brain bank) is a collection of human tissue specimens from the nervous system: the brain, spinal cord, muscle and peripheral nerves. The facility is engaged in a variety of functions; rapid specimen transport, tissue processing, state-of-the-art preservation methods and database management. A variety of experts, research doctors, neuropathologists and laboratory specialists, plan and manage the BTRC. Strict protocol is imposed on outside vendors whenever their services are required, particularly with respect to rapid specimen transport.

BioBank, Lifespan/Brown Covid -19

(last updated 2023-03-17 13:33:58)
»See BioBank, Lifespan/Brown Covid -19 website for more details

Contact: AdvanceRI@brown.edu

Location: Lifespan Clinical Research Center

Affiliated Centers: IDeA Advance RI-CTR (Clinical Translational Research) at Brown University, Lifespan Clinical Research Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
BioBank - Covid-19 Biospecimen Banking
Biobank – Covid -19 Biospecimen Banking
Service - Covid -19 BioBankThe biobank includes the following samples: Plasma (0.5mLs); LI plasma (0.5mLs); Serum (0.5mLs); PBMCs (0.25mLs / ~2.5M cells)

BioBank, Rhode Island

(last updated 2022-04-14 09:48:56)
»See BioBank, Rhode Island website for more details

Contact: Garrett Sullivan

Location: BioMedical Center Building  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Bioinformatics Analysis - FreezerworksSoftware: Freezerworks 2019 Ver 11.01.00Sample management software
BioBank - Biospecimen BankingService Service to store biospecimens at -80 degrees, 4 degrees and in liquid nitrogen. All equipment is connected to back-up generator power and monitored 24/7 by a Rees alarm system.
BioBank - Biospecimen Banking - Freezer - Liquid NitrogenTaylor Wharton LABS 40K Liquid Nitrogen Storage System(2) Liquid nitrogen biospecimen storage system. Holds up to 40,000 1ml samples
BioBank - Biospecimen Banking - Freezer - -80 degreesThermo Scientific HERAfreezer 24 cu. Ft. -80 degree freezer(3) Biospecimen Storage at -80 degrees. Holds up to 50,000 1ml samples
BioBank - Biospecimen Banking - RefrigeratorLABREPCO FUTURA Platinum Series 52 cu. ft. glass door refrigerator(3) Biospecimen Storage Refrigerators at 4 degrees. 4 degree hinged glass door refrigerator
BioBank - Robotic Workstation - Sample PreparationQiagen QiaCubeDNA, RNA or Protein Purification

Bioengineering Core

(last updated 2022-02-16 09:34:02)
»See Bioengineering Core website for more details

Contact: Braden Fleming, PhD

Location: CORO Center West, Suite 404  »See on the Map

Affiliated Centers: IDeA COBRE Center for Skeletal Health and Repair at Rhode Island Hospital

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Analysis System - Gait NoldusCatwlak small animal system
Analysis System - Force PlateKistler5 KN portable (6 channel)
Electromyography (EMG) monitorNoraxonWireless EMG system (8 channel)
Testing SystemsBose Corp Biaxial ELF 3200 material test system Force Testers (Tension, Compression, Pull Testers). The ELF 3200 Series perform basic materials tests including axial, axial/torsion, fretting, biaxial, and planar biaxial fatigue tests.
Testing SystemsInstron Electropuls E1000All-Electric Dynamic Test Instrument designed for dynamic and static testing on a wide range of materials and components.
Testing SystemsInstron 8521SAxial-Torsional Fatigue Testing System
Testing SystemsMTS Bionix Electromechanical Torsion SystemTorsion Test System
Testing SystemsInstron E10000LTBiaxial material test system
MicroscopeAsylum Research MFP-3D-BIOAtomic Force Microscope
MicroscopeNikon TiU inverted microscopeInverted Microscope
Imaging System - CameraQualisys Oqus 5-SeriesThe Oqus cameras are designed to capture accurate mocap data with very low latency and works with both passive and active markers.
Analyzer - MotionNorthern Digital Optotrak SystemTrack and analyze kinetics and dynamic motion in real-time
Analysis System - Force PlateTekscan Force Plate WalkwayLow profile floor walkway system that captures multiple sequential foot strikes of animals.
Analyzer - PressureTekscan I-scanPressure Mapping System
Analysis System - Mapping SystemFuji Film Prescale Pressuregraph (FPD-901E)Pressure Distribution Mapping System
PendulumCustom Active pendulum (small animal joint)System to induce frictional wear in arthrodial joints
PendulumCustom Passive pendulums (small and large animal joints)System to measure the whole joint coefficient of friction
Loading DeviceCustom Biaxial Loading DeviceTissue Engineering
Tissue Engineering SystemICCT Technologies Bio-Stretch Uniaxial SystemMechanical Stretching for Tissue Engineering
Analysis System - GaitTekscan High Resolution Walkway (HRV6)Modular pressure measurement platform for gait analysis.
Testing EquipmentKUKA KR6 700 SIXX6 DOF joint motion testing

Bioinformatics Core

(last updated 2023-03-16 15:39:36)
»See Bioinformatics Core website for more details

Contact: Christopher Hemme, PhD

Location: Pharmacy Building  »See on the Map

Affiliated Centers: IDeA Rhode Island IDeA Network of Biomedical Research Excellence (RI-INBRE) at University of Rhode Island

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Bioinformatics Analysis
Contact: Christopher Hemme
Bioinformatics Core Contact Form
Service We provide bioinformatics consultation and services to the Rhode Island INBRE community and to the general scientific community of Rhode Island. In addition to traditional bioinformatic services, our Core is expanding to 3D/VR/AR visualization services in conjunction with the URI 3D Visualization Laboratory. We are currently developing 3D/VR visualization apps for a variety of platforms including smartphones, Vive/SteamVR, and others. We also have access to the 3D printer at the URI 3D Visualization Core for printing of marcomolecules at a reasonable price.

BioMed Cores Office

(last updated 2023-02-02 15:51:56)
»See BioMed Cores Office website for more details

Contact: Lincoln Cox

Location: Arnold Lab  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction

Biomedical Informatics Core

(last updated 2023-03-16 10:08:25)
»See Biomedical Informatics Core website for more details

Contact: Liz Chen, PhD

Affiliated Centers: IDeA Advance RI-CTR (Clinical Translational Research) at Brown University, IDeA COBRE Center for Computational Biology of Human Disease at Brown University

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Biomedical Informatics Services
Request a Service
Clinical Research Resources, Biomedical InformaticsData Requests Storage and management Processing and analysis Submission and dissemination Software and Applications Requests Development REDCap Studies/Projects Project setup Education 5x5 Clinical Informatics elective Biomedical Informatics Learning Series Grant Support
Biomedical Informatics ResourcesClinical Research Resources, Biomedical InformaticsCohort Identification i2b2 tranSMART [local] i2b2/SHRINE [regional] TriNetX [national] Data Collection and Management Statewide REDCap instance Wrike and SPARCRequest Data Access and Use Unified Data Sharing & Analysis (URSA) Initiative URSA stronghold URSA data requests URSA governance URSA computational tools Subject Recruitment Research Networking and Resources

Biorepository Core

(last updated 2022-07-19 08:57:08)
»See Biorepository Core website for more details

Contact: Evgeny Yakirevich

Location: Lifespan-The Miriam Hospital

Affiliated Centers: IDeA COBRE Center for Antimicrobial Resistance and Therapeutic Discovery (CARTD) at Miriam Hospital

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
BioBank - Biospecimen Banking - Resource Center
Contact: Tao Hong
Clinical Research Resources, Procurement, storage, tracking and release of clinical isolatesCentral location of stocked well-characterized clinical isolates to be used for basic, translational and or applied research studies. Over 600 organisms collected to-date.
Profiling - Microorganism Resistance profiling
Contact: Tao Hong
Clinical Research resources, ProfilingConfirm phenotypic resistance profile. Phenotypic susceptibility by broth microdilution, gradient diffusion. Sensititre commercial BMD trays
Analysis - Microorganism Clinical isolates
Contact: Tao Hong
Genotypic identification of isolatesVerify and confirm microorganism identification. 16s ribosomal sequencing, rRNA internal transcribed spacer (ITS) regions.
DNA Sequencer
Contact: Tao Hong
Illumina iseq 100 Illumina assay instrument FS10001514Genotypic profiling by whole genome sequencing 16S metagenomic sequencing. Antimicrobial resistance detection by gene sequencing
BioBank - Biospecimen Banking - Freezer -80 degrees
Contact: Tao Hong
Thermo Fisher Scientific REVCO RDE60086FAClinical isolates stored at -80 degrees freezer in 1ml glycerol stock tubes

Bradley Hasbro Children's Research Center Resources

(last updated 2022-03-18 11:10:38)
»See Bradley Hasbro Children's Research Center Resources website for more details

Contact: Gregory K. Fritz, MD

Location: Bradley Hospital  »See on the Map

Affiliated Centers: Bradley Hasbro Children's Research Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Research - Child Development and Mental Health Research
Contact: Gregory K. Fritz, MD
Child Development and Mental Health Research
Clinical Research Resources, Child DevelopmentThe Bradley Hasbro Children's Research Center (BHCRC) encompasses a broad spectrum of research programs that share a commitment to studying the impact of psychological factors on the growth and development of children and their families. BHCRC investigators are exploring new insights into the genetic roots of autism; finding pediatric bio-behavioral markers of bipolar disorder; creating effective therapies for OCD; devising effective prevention strategies for adolescent sexual risk behaviors and obesity; and much more. Areas of interest include child and adolescent psychiatric disorders, forensic issues and juvenile justice, pediatric behavioral health, biological basis of psychiatric disorders, prevention and early intervention, and health services research.
Research - Pediatric Mood, Imaging and Neurodevelopment (Pedi-MIND) program
Contact: Daniel Dickstein, MD
Pediatric Mood, Imaging and Neurodevelopment (Pedi-MIND) program
Clinical Research Service, Pediatric ImagingThe goal of the Pediatric Mood, Imaging and Neurodevelopment (Pedi-MIND) program is to identify biological and behavioral markers of psychiatric illness in children and adolescents in order to improve diagnosis, treatment, and prevention of these conditions.
Research - Rhode Island Consortium for Autism Research & Treatment (RI-CART)
Contact: RICART
RI-CART Website
Clinical Research Resources, AutismThe Rhode Island Consortium for Autism Research & Treatment (RI-CART) is working to improve the lives of Rhode Islanders with autism spectrum disorder and related neurodevelopmental disorders by promoting collaborative, cutting-edge research, improving health care and support services, and providing data-driven education and advocacy. We’re a community of families and individuals, researchers, clinicians, educators, and local agencies focused on both today’s and future generations.
Research - Bradley Hospital Sleep and Chronobiology Research Laboratory (Sleep Lab)
Contact: Mary A. Carskadon, MD
Sleep for Science (Sleep Research Lab) Website
Clinical Research Resources, SleepSleep for Science is a program of research focusing on understanding how sleep patterns are shaped and how they affect other activities, functions, and biological processes. Our research is chiefly about sleep patterns and processes in young humans – children, teens, and young adults.
Research - Developmental Disorders Genetics Research
Contact: Eric Morrow
DDGRP Website
Clinical Research Resources, Developmental GeneticsThe Developmental Disorders Genetics Research Program was established in the fall of 2009 by Brown University to facilitate advances in translational research concerned with the genetics of developmental disorders. 

Brown University Herbarium

(last updated 2022-03-08 14:59:25)
»See Brown University Herbarium website for more details

Contact: Rebecca Kartzinel

Location: Biomed Center  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
HerbariumDried and pressed plant specimens mounted on sheets of archival paper. Plant data.The collection includes around 100,000 plant specimens and is an important depository of Rhode Island and New England collections. It is also rich in western and southern North American plants and includes special sets of historically valuable specimens from 19th and early 20th century western US expeditions. Among other important collections, the herbarium also includes a full set of Charles Wright's Cuban plants (1856-1867) and a unique and classic collection of Carex

Brown University Oncology Group (BRUOG)

(last updated 2023-03-16 10:26:04)
»See Brown University Oncology Group (BRUOG) website for more details

Contact: Roxanne Wood

Location: 233 Richmond Street, Providence, RI 02903  »See on the Map

Affiliated Centers: Brown University Oncology Research Group (BrUOG)

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Research - Oncology
Contact: Roxanne Wood
Clinical Trials Support, Oncology ResearchThe Brown University Oncology Research Group (BrUOG) mission is to improve cancer care through the implementation of innovative, multidisciplinary cancer clinical trials. BrUOG provides the infrastructure for the efficient development and implementation of these trials, which are created by Brown University faculty. BrUOG’s administrators and physicians provide support for the initial study concept and validation of trial design, and are responsible for trial administration, safety monitoring, data analysis, and the presentation and publication of findings. The trials sponsored by BrUOG investigate novel, cutting-edge applications of chemotherapy, biologic agents and other cancer treatments. Clinical trials are available for a broad range of disorders in hematology/oncology and these include treatment for cancers of the breast, brain, lung, gastrointestinal tract, skin, and prostate as well as trials in leukemia and lymphoma.

Brown-Lifespan Center for Digital Health

(last updated 2024-03-28 11:04:57)
»See Brown-Lifespan Center for Digital Health website for more details

Contact: Norka De La Rosa Ramirez

Affiliated Centers: Brown-Lifespan Center for Digital Health

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Research - Emergency Digital Health ResourcesClinical Research Resources, Emergency Digital HealthEDHI’s mission is to use digital health to transform the care of patients with acute care needs before, during, and after their visit by developing and deploying effective, evidence-based digital health tools. The goal is to use technology to improve access to patients and increase the efficiency of health care delivery. As this field rapidly expands, it is critical for us to develop theoretically based interventions and to provide evidence that digital health tools are acceptable and effective, for both clinicians and patients. EDHI’s vision is for digital health to be an evidence-based, effective and well-integrated tool for creating and restoring health.

Carney Institute for Brain Science

(last updated 2023-03-17 13:34:50)
»See Carney Institute for Brain Science website for more details

Contact: Carney Institute

Location: 164 Angell St., 4th Floor Providence, RI 02912  »See on the Map

Affiliated Centers: Carney Institute for Brain Science

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Research - Brain ScienceClinical Research Resources, Brain ScienceThe Carney Institute for Brain Science (formerly the Brown Institute for Brain Science –BIBS) advances multidisciplinary research, technology development, and training in the brain sciences and works to establish Brown University as an internationally recognized leader in brain research. The Institute unites more than 100 faculty from a diverse group of departments at Brown, spanning basic and clinical departments, and physical and biological sciences. The Carney Institute provides a mechanism to advance interdisciplinary research efforts among this broad group and provides essential support to obtain and administer multi-investigator grants for research, infrastructure, and training. The Institute actively seeks new training funds to support interdisciplinary education that transcends that available in individual academic departments.

Center for AIDS Research (CFAR) - Providence/Boston

(last updated 2023-03-16 10:57:11)
»See Center for AIDS Research (CFAR) - Providence/Boston website for more details

Contact: Lauri Bazelman

Location: The Miriam Hospital, CFAR Building, Room 134  »See on the Map

Affiliated Centers: Center for AIDS Research (CFAR) - Providence/Boston

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Research - BioBehavioral Research Support, HIV
Contact: Curt Beckwith
BioBehavioral Sciences Webpage
Clinical Research Service, HIV ResearchThe BioBehavioral Sciences Core (BBSC) provides help with participant recruitment, enrollment, and retention to advance biobehavioral research; services to support innovative medical and behavioral data collection approaches, including methods, tools, and assessments; expertise and services related to regulatory and human subjects’ compliance, and the ethical conduct of research for vulnerable populations; provide expertise and services to support the development, implementation, and evaluation of interventions to improve HIV prevention and continuum of care outcomes; specialized services for the conduct of implementation science research and for performing cost-effectiveness research; PrEP related services and information; and guidance and support for accessing EMR data.
Research - Biostatistics, HIV
Contact: Joseph Hogan, ScD
Biostatistics Webpage
Clinical Research Service, HIV ResearchThe Biostatistics Core ensures that all research undertaken by Center for AIDS Research (CFAR) investigators uses optimal methods for study design and analysis. The Core provides guidance and collaboration in developing grant applications; collaboration on study design, conduct, and statistical analyses; statistical training and mentoring; facilitation of linkages to potential collaborators; provides guidance and support for accessing EMR data; facilitates access to HIV databases from other centers/programs, and develops novel statistical and epidemiological methods for HIV research.
Research - Substance Use Research Core, HIV
Contact: Christopher Kahler, PhD
Substance Use Research Core Webpage
Clinical Research Service, HIV ResearchThe Substance Use Research Core (SURC) offers services and expertise on the methods needed to conduct effective Substance Use (SU)/HIV research. The SURC offers expertise in innovative methods for assessing and analyzing SU, and developing and implementing interventions to address alcohol, tobacco, and other drug use. Services include: expertise in developing research projects that address gaps in SU/HIV priority issues both domestically and globally; advice on training on the most appropriate methods for assessing SU; advice and training on incorporating effective and up-to-date SU interventions; and guidance on addressing ethical issues with SU research including input on IRB protocols and human subject sections of grant applications and access to group trainings.
Administration - CFAr
Contact: Vicki C. Godleski
Administrative Core Webpage
Clinical Research Service, CFAR Coordinating CenterThe CFAR Administrative Core has built an HIV infrastructure across the partner institutions and provides oversight of the entire CFAR community with responsibility for sound management, organizational structure, appropriate resource allocation, evaluation and the promotion of inter/multi-disciplinary translational HIV research. Through efficient communication to CFAR membership, the Core manages a highly interactive and collaborative scientific environment across geographically dispersed settings in domestic, national and international sites.
Research - Basic Sciences, HIV research
Contact: Rami Kantor, MD
Basic and Translational Sciences Webpage
Clinical Research Service, HIV ResearchThe Basic Sciences Core builds and supports collaborative research and synergy between basic, translational clinical and behavioral investigators as well as other multidisciplinary scientists, by providing laboratory, consultation and mentoring services. Services include; Viral load measurement, STI testing, Genital tract specific assays, Biologic specimens collection techniques, HIV-1 and 2 drug resistance assays, Identification of HIV dependency factors (HDF), Cell culture, Viral stocks, Immune activation, Laboratory Consulting, Training and Mentoring. Additional assays may be developed as necessary, please contact the Core Director.

Clinical Pharmacokinetics Research Laboratory

(last updated 2022-03-18 12:10:40)
»See Clinical Pharmacokinetics Research Laboratory website for more details

Contact: Fatemeh Akhlaghi

Location: Laboratory 490, Avedisian Hall  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Pharmacokinetics Consultation
Contact: Fatemeh Akhlaghi
Clinical Research Resources, PharmakokineticsThe laboratory is capable of providing support for the design and implementation of pre-clinical and clinical pharmacokinetics studies as well as design and conduct of ancillary in vitro studies (protein binding and microsomal incubations to characterize phase 1 or 2 metabolism). With extensive background in pharmacokinetics modeling and simulation using NONMEM, WinNonlin and Simcyp softwares, the laboratory can provide a valuable resource for on-going or completed clinical studies. Additional data analysis capabilities includes in-vitro in-vivo correlation (IVIVC) and bioequivalence analysis.
Pharmacokinetics, Bioanalytical support
Contact: Fatemeh Akhlaghi
Clinical Research Resources, PharmakokineticsThe Clinical Pharmacokinetics Research Laboratory is equipped with two UPLC-MS/MS and one quadrupole-time-of-flight mass spectrometer (ESI-QTOFMS) systems capable of measuring the concentration of small molecule xenobiotics and their metabolites as well as endogenous or therapeutic peptides and proteins. To date, this laboratory has developed various assays for the quantification of up to 60 different compounds and validated these assays according to guidelines by the Food and Drug Administration of the United States. The laboratory is proficient in providing analytical support for on-going pre-clinical and clinical studies and during different stages of a drug development project.

Clinical Research and Development Service

(last updated 2021-12-01 13:12:08)
»See Clinical Research and Development Service website for more details

Contact: Gaurav Choudhary

Location: The Providence VA Medical Center  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Research - Clinical Research and Development Service ResourcesClinical Research Resources, Veteran PopulationThe VA Research's fundamental mission is to advance the healthcare of Veterans. The Providence VA Medical Center has a large funded research and development program, including studies in Rehabilitation Medicine, Cardiology, Mental Health, Neuroscience, Substance Abuse, Health Services & Economics, and Pulmonary Disease. These studies enhance our ability to provide state-of-the-art techniques and treatments to our patients. At the same time, the research program helps Providence VAMC recruit and retain the highest quality health care professionals who treat our Veterans in the VA Clinics on a daily basis.

Community Translation

(last updated 2024-03-28 10:10:56)
»See Community Translation website for more details

Contact: Pam Borek

Affiliated Centers: IDeA COBRE for Stress, Trauma and Resilience (STAR) at Miriam Hospital

Instrument/Service/Resource UnitManufacturer/DescriptionFunction

Computational Biology Core (CBC)

(last updated 2022-03-24 08:51:29)
»See Computational Biology Core (CBC) website for more details

Contact: Ashok Ragavendran

Affiliated Centers: Center for Computation and Visualization (CCV), IDeA COBRE Center for Computational Biology of Human Disease at Brown University

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Analysis - Data Analysis
Contact: CBC help
ServiceThe core provides assistance in experimental design and data processing pipelines for high-throughput datasets generated in individual projects, particularly for DNA/RNA sequencing data.
Analysis - Standardized DataServiceDevelop/Implement Bioinformatic Pipelines; GATK whole exome, Cut and run. Develop/Implement Standardized QC for Workflows. Experimental Design Support; Power Analysis for Microbiome and RNAseq. Exploratory Data Analysis; RNAseq, scRNA seq.
Tooling
qckitfastq
Software - R-QckitA comprehensive quality control R package for Next Generation Sequencing FASTQ data.
Tooling
RSeqAn
Software - RSeqAnWrappers for the SeqAn library for use in R with Rcpp
Tooling
bioflows
Software - BioflowsA bioinformatics workflow engine that streamlines the most common analysis pipelines. Key features include: 1) Provision of standardized workflows 2) A module for automating SRA downloads and 3) External tools are made available as CONDA packages along with the tool.
ToolingSoftware - ScriptsAccess Genbank, BioCookBook.jl
Tooling
NMRdock
Containerization with Docker - NMRDockNMRdock is a Docker container image for processing raw NMR time domain data into frequency domain spectra and analyzing the spectra. The image includes NMRPipe and NMRFAM-Sparky for processing and analysis, respectively. NMRdock can be installed on any operating system (OSX, Windows, or Linux) and has the full functionality of both NMRPipe and NMRFAM-Sparky. For guides on processing BioNMR data in NMRdock, please access our Walkthrough Section
ToolingContainerization with DockerIDeP
Tooling
Ingenuity Pathway Analysis
Request a Service
Software- Ingenuity Pathway AnalysisThe CBC provides access to the Ingenuity Pathway Analysis web server at Brown University.
Analysis - Data AnalysisServiceThe CBC now allows for a very restricted schedule of Fee-For-Service project.
Data Management
RefChef
CCV - RefChefRefChef is a reference management tool used to: (1) document the exact steps undertaken in the retrieval of genomic references; (2) maintain the associated metadata; (3) provide a mechanism for automatically reproducing retrieval and creation of an exact copy of genomic references.
Training and Support
Workshops
ServiceWorkshops
Training and Support
Request a Service
Service - ConsultingThe Core provides two distinct complimentary services to all researchers at Brown. Appointment Based, A team of experienced computational biologists and biostatisticians are on-hand to help investigators design experiments. Weekly Consulting Sessions, The Core offers two hours *walk-in Consulting* sessions for all researchers to discuss any immediate issues in data analysis including trouble-shooting code, help with statistical analysis and discussion of options for bioinformatic analysis.
Training and SupportService -Talent DevelopmentStudent worker/interns, Guidance and mentoring
Training and Support
Outreach
Service - OutreachCBC hosts workshops, publishes tutorials on computing tools used by bioinformaticians, and provides analysis support to the Brown community.

CyTOF Shared Resources (Legorreta Cancer Center at Brown University)

(last updated 2023-06-09 15:25:52)
»See CyTOF Shared Resources (Legorreta Cancer Center at Brown University) website for more details

Contact: Patrycja Dubielecka-Szczerba, PhD

Affiliated Centers: Legorreta Cancer Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Training and Technical AssistanceServiceAdvise investigators with experimental design, implementation and data analysis. Provide support for grant submissions.

Design and Analysis Core

(last updated 2024-03-28 10:24:24)
»See Design and Analysis Core website for more details

Contact: carney-institute@brown.edu

Affiliated Centers: Carney Institute for Brain Science, IDeA COBRE Center for Central Nervous System Function at Brown University

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Design - Experimental DesignClinical Research Resources, Behavior and Neuroimaging
Multilevel and Hierarchical ModelingClinical Research Resources, Behavior and Neuroimaging
Machine LearningClinical Research Resources, Behavior and Neuroimaging
Feature ExtractionClinical Research Resources, Behavior and Neuroimaging
Effective and Functional ConnectivityClinical Research Resources, Behavior and Neuroimaging
Spatial-Temporal ModelingClinical Research Resources, Behavior and Neuroimaging
Time Series ModelingClinical Research Resources, Behavior and Neuroimaging
General Linear Model (GLM) and Linear Model (LM)Clinical Research Resources, Behavior and Neuroimaging
Analysis of Variance (ANOVA)Clinical Research Resources, Behavior and Neuroimaging
Regression for High Dimensional DataClinical Research Resources, Behavior and Neuroimaging
Analysis - Network Analysis Clinical Research Resources, Behavior and Neuroimaging
Causal InterferenceClinical Research Resources, Behavior and Neuroimaging

Design and Analysis Core (DAC)

(last updated 2022-10-17 15:20:42)
»See Design and Analysis Core (DAC) website for more details

Contact: Kristin Fortin-Ashburne

Location: Butler Hospital  »See on the Map

Affiliated Centers: IDeA COBRE Center for Neuromodulation (CCN) at Butler Hospital, Carney Institute for Brain Science

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Design and Analysis Services
Contact: Kristin Fortin-Ashburne
Quantitative Sciences Program
The Design and Analysis Core (DAC) provides experimental design, statistical support, and neuroimaging consultation services to COBRE Project Leaders and the broader scientific research community.DAC faculty are affiliated with the Quantitative Sciences Program (QSP) of the Departments of Psychiatry and Neurology at the Alpert Medical School of Brown University and the Center for Neurorestoration and Neurotechnology at Providence VA Medical Center. Core Leader Richard Jones, ScD is a psychiatric epidemiologist and methodologies, and the director of the QSP. Core Co-Leader Jennifer Barredo, PhD is a neuroscientist with expertise in neuroimaging methodologies including advanced diffusion imaging, multimodal analysis, and machine learning. The DAC also maintains scientific computing resources and workflows available to COBRE project and pilot investigators and sponsors educational seminars and workshops.

Drosophila Media Facility

(last updated 2024-02-28 15:37:57)
»See Drosophila Media Facility website for more details

Contact: Chuck Toth

Location: BioMedical Center Building  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Drosophila Media PreparationServiceThe Drosophila Media Facility is dedicated to providing investigators with high quality media for Drosophila research. This centralized kitchen is equipped with two food-service quality Cleveland Range Kettles (MKET-12-T). Media is pumped into trays of vials or plastic bottles using a custom built fly food dispenser. Researchers using glass vials return them to the facility where they are autoclaved, washed, and filled again. This centralized kitchen is equipped with a food-service quality Cleveland Range Kettle MKET-12-T. Media is pumped into trays of vials or plastic bottles using a Gilson Fly Food Dispenser. Used glass vials are returned to the facility where they are sterilized in a Steris autoclave and washed in a Northwestern Systems G403 electric heat glassware washer.

Drug Discovery Shared Resources (Legorreta Cancer Center at Brown University)

(last updated 2023-06-09 15:26:28)
»See Drug Discovery Shared Resources (Legorreta Cancer Center at Brown University) website for more details

Contact: Shengliang Zhang, PhD

Affiliated Centers: Legorreta Cancer Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Training and Technical AssistanceServiceAdvise interested investigators on cancer drug screens, cell-based assay development, assay optimization, and use of various chemical libraries/FDA-approved drugs to support research in the area of drug discovery and development. Advise on target validation, and interface with medicinal chemistry. Provide technical support for screening implementation, library plating, high-throughput robotic screening, and advice on prioritization of hits. Provide support for grant submissions.

Electron Microprobe Facility

(last updated 2023-03-16 11:13:43)
»See Electron Microprobe Facility website for more details

Contact: Joseph S Boesenberg

Location: Geo-Chem Building  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Analyzer - Electron Microprobe
Contact: Stephen Parman
Cameca SX100 Electron Microprobe Analyzer The Cameca SX-100 electron microprobe is equipped with 5 wavelength dispersive spectrometers (WDS) and a Rontec energy dispersive spectrometer (EDS).The WDS spectrometers each contain two or four diffracting crystals and presently include LTAP, TAP (2), LPET (2), PET, LLIF (2), LIF, LPCO, PC1 and PC2. The last three crystals are used to measure the light elements (boron to sodium). The absolute detection limits for the instrument are approximately 50-200 ppm, depending on the element. The EDS spectrometer is capable of detecting all elements above sodium (Na). X-ray element maps can easily be acquired on the microprobe. Using 512x512 pixel maps, up to nine element maps (5 elements on WDS, 4 with EDS), plus a backscattered electron (BSE) image, can be obtained simultaneously. Maximum resolution on any one map is one micron per pixel. Utilizing the coordinate system, maps of entire thin sections can be generated.

Electron Microscopy Facility

(last updated 2022-03-18 09:14:21)
»See Electron Microscopy Facility website for more details

Contact: Anthony McCormick

Location: Room 020D, Engineering Research Center Building  »See on the Map

Affiliated Centers: Instrumentation for Molecular and Nanoscale Innovation (IMNI)

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Microscope - Focused Ion Beam Electron (FIB)Thermo/FEI Helios Dual Beam Focused Ion Beam Electron Microscope (FIB) with an Omniprobe nanomanipulator and autoTEM sample preparationThe FIB is fully equipped for (near) simultaneous ion/electron beam imaging and patterning of specimens. A Pt metal deposition source is available for ion (or electron) beam assisted deposition of conducting lines. A second source is available to enhance the carbon removal rate. An Omniprobe AutoProbe 200.2 allows the physical manipulation of samples with nanometer precision and is used along with Pt metal deposition and standard FIB trenching to allow the selection and removal of electron transparent TEM samples from specific microstructural features. A NPGS pattern generation system (plus beam blanker and external scan interface) controls the electron beam for high resolution, interlaced pattern generation used in the FIB fabrication of nanostructures. Three dimensional crystallographic data can be generated from specimens using the fully automated EBSD system (Oxford HKL&EBS-3). The microscope is also equipped with an EDS detector for elemental analysis. An electron flood gun can be used with the ion beam to image/etch nonconductive samples. A low temperature holder is available for beam sensitive samples.
Microscope - Scanning Electron (SEM)LEO 1530 High Resolution Scanning Electron Microscope (HRSEM)The LEO 1530 VP ultra-high resolution field emitter SEM that allows for a resolution of 1 nm at a voltage of 20 kV in high vacuum and 2 nm at 30 kV in the variable pressure mode. It is fully equipped with EDS for chemical mapping and includes a Debbem tensile test stage 5kn. The instrument is equipped with Nabity pattern generating software a high speed beam blanker and is set-up for high resolution electron-beam lithography. The LEO 1530 VP is capable of a resolution of 2.1 nm at very low electron energies (1 kV) which is of great use for beam-sensitive materials like polymers and insulating surfaces. Also very useful for insulating samples is the variable operating pressure mode which allows insulating materials to be imaged without coating the surface.
Microscope - Transmission Electron (TEM)FEI CM20 TEMThe FEI CM20 is available for applications that require high tilt, moderate resolution (0.23 nm). This 200 kV analytical TEM allows the large specimen tilts needed for dislocation characterization and weak-beam imaging applications. It is equipped with a low background double tilt holder and a liquid nitrogen temperature holder. Compositional analysis is performed on this instrument using energy dispersive x-ray spectroscopy. Images are recorded using a large field of view, side mounted, digital image acquisition system.
Microscope - Scanning Transmission Electron Microscope -S(TEM)JEOL 2100F - S (TEM)The 2100F is a 200 kV, field emission source, high-resolution/analytical S(TEM) capable of 0.10 nm lattice resolution. It is primarily used for obtaining lattice images or when chemical or crystallographic information is required from laterally small areas (1-10 nm). The instrument is equipped with an x-ray spectrometer capable of light element detection, a Gatan image filter (GIF) for element and phase analyses and enegy filtered imaging, a high tilt holder for electron tomography and a high-resolution CCD camera system for digital image acquisition and processing. A low background double-tilt holder for chemical analysis by EDS, a standard double tilt holder, a heating holder capable of 1000C, and a heating straining holder are available. Probes as small as 1 nm in diameter are accessible for micro-diffraction experiments. STEM mode for EDS line and area scans, bright and dark field STEM detectors, and high angle annular dark field is capable in STEM mode.
Spectrometer - ThermoElectron K-Alpha XPSThermo/FEI K-Alpha X-Ray Photoelectron SpectrometerThis equipment is used to study the surface composition of materials using photoelectrons generated by 30 kV monochromated Aluminum K-Alpha x-rays hitting the sample. It is equipped with an Argon sputter gun for surface cleaning and depth profiling. There is a tilt and rotate holder. There is a transfer holder so samples can be transferred to the XPS with exposure to atmosphere.
Microscope - Quattro S-E(SEM)Thermo/FEI Quattro S-E(SEM)The Quattro is an environmental SEM which means that the sample chamber can be set to a (relatively) high pressure for water containing samples.  This SEM has EDS (X-ray detection) and EBSD (electron backscatter). The Quattro S is a field emission scanning electron microscope capable of generating and collecting all available information from any type of sample material. It provides the most versatile high-resolution low-vacuum FEG SEM with extended low-vacuum capabilities and the most versatile high resolution SEM for characterization, prototyping and in situ analysis. The features include three vacuum modes enabling investigation of conductive, non-conductive and high-vacuum incompatible materials such as High-vacuum mode (<6*10-4 Pa) for imaging and microanalysis of conductive and/or conventionally prepared specimens; Low-vacuum mode (10 to 130 Pa) for imaging and microanalysis of non-conductive specimens without preparation; and ESEM™ mode (10 to 4000 Pa) for high-vacuum incompatible specimens which are impossible to investigate with traditional EM methods. The system is equipped with a 5-axes motorized x-y-z-tilt-rotate stage,for Sample navigation.
Sample PreparationElectron Microscope Facility Sample Preperation Area Tools available in the EMF sample preparation area include a jet polisher, polishing benches, dimpler and high and low speed diamond saws.The sample prep area has a carbon thread evaporator and Gold/Palladium sputter coater for making conductive coatings on SEM samples. There is an ion mill (PIPS) for making TEM samples. There is also a plasma cleaner for TEM sample holders and SEM samples.

Emergency Medicine Research Laboratory

(last updated 2023-04-06 13:33:41)
»See Emergency Medicine Research Laboratory website for more details

Contact: Gregory Jay

Location: Coro West
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Research - Emergency Medicine Research Laboratory Resources
Contact: Francesca Beaudoin
Clinical Trials Support, Emergency MedicineThe research program in the Department of Emergency was established to support investigator-initiated research and pharmaceutical, biologic and biomedical device trials. The program is supported by a Research Program Administrator, two pre-award Research Administrators, a Clinical Research Supervisor, and a staff of Clinical Research Assistants. The department maintains clinical research space within emergency departments as well as fully-equipped basic science laboratories, and has ongoing collaborations with Brown University and other hospital departments.The main focus areas of the Department of Emergency Medicine research program are (1) injury prevention and control, (2) cardiovascular, neurologic, and resuscitation science, (3) pediatric, age, and gender specific care, and (4) healthcare systems science.

Environmental Geochemistry Facility

(last updated 2023-04-04 14:54:14)
»See Environmental Geochemistry Facility website for more details

Contact: Marcelo Alexandre

Location: MacMillan Hall  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Analyzer - Elemental AnalyzerThermo Scientific, FlashSmart EAAnalysis of carbon, nitrogen, and sulfur concentration of solid samples
Analyzer - Inorganic Carbon AnalyzerUIC, INC Inorganic Carbon AnalyzerMeasures total inorganic carbon by automated acidification and coulometric detection in a wide variety of sample matrices. Solid samples ranging from low ppm to 100% inorganic carbon can be analyzed with this system.
Sample Preparation - Freeze Dry SystemLabconco FreeZone 6 Liter For removing water and other solvents from frozen samples by sublimation.
Liquid Chromatography SystemDionex DX500Ion chromatography analysis of anions and cations in marine and freshwater samples
Sample Preparation - Microwave Digestion SystemMilestone UltrawaveUsed to digest solid samples (soils, sediments, rocks, plants, tissues), for elemental analysis.
Spectrometer - Atomic Absorption Spectrometer-Graphite Furnace (GFAAS)Perkin Elmer AAnalyst 600 Graphite Furnace This spectrometer is useful for measuring trace levels of metals in water and soil.
Spectrometer - Inductively Coupled Plasma Optical Emission Spectrometer (ICP-OES)Thermo Scientific iCAP 7400 DUO ICP-OESAnalysis of most elements with atomic weights above 10.
X-Ray Fluorescence - HandheldInnov-X Systems Alpha 4000 Handheld Non-destructive elemental analysis on a variety sample types for concentrations of some metals ranging from about 20 ppm to 10%.
X-Ray Fluorescence - HandheldOlympus Delta Professional HandheldNon-destructive elemental analysis on a variety sample types for concentrations of elements greater than 10 ppm.
Mass Spectrometer - Isotope Ratio Mass SpectrometerThermo 253+IRMSDedicated to determine the triple oxygen isotopic composition (17O/16O and 18O/16O) of silicates, carbonates, gas and waters
Liquid Chromatography - Mass SpectrometerAgilent 1200 LC/MS SystemUsed to separate and then quantify the chemical components in a given sample.
Gas Chromatography - Flame Ionization DetectorAgilent 7090B GC-FIDUsed to measure the trace levels of semivolatile organic compounds in a given organic extracted sample.
Gas Chromatography - Mass SpectrometerAgilent 5977B GC-MSDUsed to determine molecular composition and the concentration of organic compounds in organic extracted samples
Mass Spectrometer - Isotope Ratio Mass SpectrometerThermo Scientific GC-C-IRMS Delta V PlusUsed primarily for compound specific ð13C in organic extracts
Accelerated Solvent Extractor (ASE)ASE 200 DionexUsed to extract organic compounds from solid samples.

Extracellular Vesicle Core

(last updated 2022-03-18 09:50:35)
»See Extracellular Vesicle Core website for more details

Contact: Sicheng Wen MD, PhD, Director

Location: CORO West Research Building  »See on the Map

Affiliated Centers: IDeA COBRE Center for Stem Cells and Aging at Rhode Island Hospital

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Centrifuge - UltraThermo Fisher WX80 ultracentrifugeUltracentrifugation is the classical method for extracellular vesicles isolation. The Extracellular Vesicle Core contains two Thermo Fisher WX80 ultracentrifuges with Sorvall AH-629 rotors.
PCR Thermal CyclerViiA 7 real-time PCR system with twister robotWe identify extracellular vesicles MicroRNA/mRNA profiling using the ABI TaqMan PCR array by ViiA 7 Real-Time PCR System, which is fully compatible with any standard or fast-cycling 384- or 96-well plates and TaqMan Array Micro Fluidic Cards and allows quickly and efficiently look up to 348 unique microRNAs/mRNAs per sample with as little as 1ng of input total RNA with pre-amplification.
Analyzer - Nanoparticle CounterNanoSight 5000 Nanoparticle CounterNanoparticle tracking analysis (NTA) – direct and real-time visualization and analysis of nanoparticles in liquids, and calculate the size, size distribution and concentration of the particles. Brownian motion of nanoparticles is analyzed using the Stokes-Einstein equation.
UltrafiltrationTangenXBy using tangential flow filtration (TFF) technology, TangenX delivers rapid and highly efficient isolation of extracellular vesicles from large volumes of samples.

Flow Cytometry and Sorting Facility

(last updated 2023-01-30 11:27:24)
»See Flow Cytometry and Sorting Facility website for more details

Contact: Kevin Carlson

Location: Room 283, BioMedical Center Building  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Fluorescence Activated Cell Sorter (FACS)Becton Dickinson (BD) Biosciences FACS Aria IIICell counting, sorting, biomarker detection. The FACSAria has five air-cooled lasers at 351nm, 488nm, 561nm, 633nm, and 407nm allowing multicolor analysis of up to 20 parameters. It can sort 1 to 4 populations simultaneously and is equipped with an Automated Cell Deposition Unit, an Aerosol Management System and a refrigeration system. It can accept various sample input tubes including 1 mL microtubes, 12 x 75-mm test tubes, and 15 mL tubes into the sample and collection chambers.
Flow Cytometer - Benchtop Analyzer
Cytek Info
Cytek AuroraThe Cytek Aurora can analyze similar and very similar spectral emitting fluorochromes. Instead of analyzing small chunks of fluorescence and calculating fluorescence spill over, the Cytek Aurora looks at the full spectrum emitence of each fluorochrome. This allows colors that would normally be unusable with each other to be run in tandem. The Cytek Aurora can analyze up to 54 fluorochromes, 41 parameters (FSC, 488 SSC, 405 SSC).
Fluorescence Acticated Cell Sorter (FACS)Becton Dickinson (BD) Biosciences FACS CelestaCell counting, biomarker detection. The FACSCelesta has three air-cooled lasers at 488nm, 561nm and 407nm allowing multicolor analysis of up to 15 parameters that has an attached high throughput system (HTS) that allows users to analyze samples directly from a 96 well plate.

Flow Cytometry Core - Rhode Island Hospital

(last updated 2022-03-09 12:14:31)
»See Flow Cytometry Core - Rhode Island Hospital website for more details

Contact: Mark Dooner

Location: Coro West Building, Suite 5.08A,  »See on the Map

Affiliated Centers: IDeA COBRE Center for Stem Cells and Aging at Rhode Island Hospital

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Fluorescence Activated Cell Sorter (FACS)Becton Dickinson (BD) Biosciences LSRII Analyzer/Flow CytometerDigital, 4 laser (355nm, 405nm, 488nm and 635nm) flow cytometric analysis system with 10 fluorescent channels plus 2 scatter channels. BD FACSDiva software with digital compensation and ModFit software for cell cycle analysis.
Mass Cytometry
Legorreta Cancer Center
Fluidigm Helios (CyTOF) Mass CytometryMass cytometry combines the technologies of flow cytometry with that of mass spectrometry. It applies nebulization, aerosolization and ionization to cells labeled with heavy metal isotope-conjugates, allowing for ion separation based on their mass:charge ratio and quantification of each isotope on a per cell basis ultimately determining properties of a cell population at a single-cell resolution. The technique of mass cytometry is powerful, as it can analyze more cellular targets without the problem of compensation as seen in flow cytometry. The Helios is capable of simultaneously analyzing up to more than 50 parameters both on cell surface and intracellularly.
Fluorescence Activated Cell Sorter (FACS)Becton Dickinson (BD) Biosciences Influx Cell Sorter 5 laser system (355nm, 405nm, 488nm, 561nm and 638nm) for simultaneous detection of up to 14 parameters. Sorts up to 4 different cell populations. Capable of single cell deposition into many different sized culture plates (96 or 384 well plates, etc). Equipped with a small particle objective for FSC size determination down to 0.5 micrometers. Enclosed in a biosafety hood. The sorter separates particles on the detection of fluorescent markers on particles such as cells, chromosomes, bacteria or nuclei. Then the collected cells are suitable for downstream analysis either in molecular applications like protein assays and PCR, or used in viable assays such as tissue culture or injected into in vivo models. Generated data may also be used to determine percentages of interrogated populations. The sorter can separate populations into tubes (1.5ml, 4ml, 15ml, 50ml), multi-well plates (6, 24, 48, 96, 384), or directly onto microscope slides.
Training and Technical AssistanceService

Fluid Biomarkers Laboratory

(last updated 2024-03-28 14:04:40)
»See Fluid Biomarkers Laboratory website for more details

Contact: Kristine Pelton

Location: BioMed Center, 85 Brown St, RM106  »See on the Map

Affiliated Centers: Center for Alzheimer's Disease Research

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Analyzer - HD-X™ Automated Immunoassay QuanterixThe SIMOA® HD-X™ Analyzer is an ultrasensitive protein biomarker analysis platform that uses single-molecule array (Simoa®) technology, which enables sensitive and specific measurement of low-abundance proteins in complex biological samples such as serum, plasma, CSF, urine, saliva, as well as cell and tissue lysates. The HD-X™ system features high-throughput processing and enables simultaneous use of digital (single molecule counting) and analog (integrated fluorescence intensity) measurements to provide ultra-sensitive single molecule detection with dynamic range of 4-5 logs.
Analyzer - Meso Scale QuickPlex® SQ 120MMMeso ScaleMeso Scale Discovery (MSD) QuickPlex® SQ 120MM is a high-throughput multiplex assay platform for protein and biomarker analysis. The QuickPlex 120 system is capable of measuring up to 10 different protein analytes in a single well of a 96-well plate, making it ideal for large-scale and complex studies. It uses electrochemiluminescence technology to deliver highly sensitive and reproducible results. Additionally, MSD offers a range of pre-validated assays for a variety of applications including neurodegeneration, neuroinflammation, intracellular signaling, toxicology and phosphorylation analysis. The QuickPlex 120 system is designed to support basic research, drug discovery, and clinical diagnostics with the option for easy-to-build custom multiplex assays.
Analyzer - SMCxPROSigmaThe SMCxPro® analyzer uses both plate-based and bead-based singleplex assay designs for the quantification of protein-based targets in highly complex samples including serum, plasma, CSF and saliva. Additionally, the digital quantification of individual molecules provides fg/ml sensitivity required for detection of blood based protein biomarkers. The SMC™ technology allows the measurement of proteins with increased precision, enabling quantification at both low and high expression levels.

Genomics Facility - Brown

(last updated 2022-01-20 09:58:41)
»See Genomics Facility - Brown website for more details

Contact: Christoph Schorl, PhD

Location: Room 109, Laboratories for Molecular Medicine  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
BioanalyzerAgilent Bioanalyzer 2100Microfluidics-based platform for sizing, quantification and quality control of DNA, RNA.
Analyzer - Fragment Advanced Analytical, Fragment AnalyzerCapillary Electrophoresis - Analyze DNA fragments for Next-Gen Sequencing, genotyping, checking RNA quality and quantity, and working with microsatellite simple sequence repeats (SSRs).
Cell CounterLife Technologies Automated Countess Cell CounterMeasure cell count and viability (live, dead, and total cells) using the standard trypan blue technique.
CentrifugeSorvall Legend T BenchtopLow to medium speed centrifugation
Centrifuge - UltraBeckman Coulter Optima Max UltraCentrifugeHigh speed centrifugation with MLA130, TLA110 & TLA100 Rotors
DisrupterCovaris S220 High Performance UltrasonicatorDNA, RNA, and chromatin shearing, tissue homogenization, cell lysis, compound dissolution, and particle micronization
Imaging System - Gel Imager LI-COR Odyssey Clx IR (Infrared) Imaging SystemWestern blot analysis, EMSA, protein arrays, In-Cell Western Assays, On-Cell Westerns, in vivo imaging, Coomassie gel documentation, DNA gel documentation, and tissue section analysis.
Nanostring GeoMX DSP
Contact: Christoph Schorl
Spatial analysis of gene or protein expression.
PCR Thermal CyclerApplied Biosystems ViiA 7 Real-Time PCR SystemMedium to high throughput 96- and 384-well fast real time quantitative PCR formats, medium to high throughput
PCR Thermal CyclerApplied Biosystems ViiA 7 Real-Time PCR SystemMedium to high throughput 96- and 384-well fast real time quantitative PCR formats, medium to high throughput
SpectrophotometerThermo Scientific Nanodrop One A microvolume spectrophotometer for measuring DNA and RNA.
Technical Assistance - Affmetrix MicroarrayServiceService to provide Affymetrix gene expression array service
Technical Assistance - NGS Library Quality ControlServiceAnalysis of library size distribution and qPCR quantification
Imaging System - OdysseyLi-Cor
Analyzer - nCounter SystemsNanoString - nCounter Sprint ProfilerMolecular barcoding technology for RNA, DNA, and protein profiling applications. Digitally examine multiple pathways in a single tube in an extraction-free workflow. Included nSolver Analysis Software. Compatible with FFPE tissue. Highly multiplexed analysis of many functional pathways such as among others cancer, inflammation, cell death and custom designed expression analysis. Operated as fee for service.
Imager and Microplate Reader BioTek Cytation 5 Cell Imaging Multi-Mode ReaderUV-Vis absorbance, Fluorescence intensity, Luminescence, Fluorescence polarization, Time-resolved fluorescence. Cell migration and invasion assays, Live cell imaging, Fluorescence cell imaging (DAPI & GFP), Multi-mode reader applications, Immunofluorescence, Phenotypic assays, Histology
PCR Thermal Cycler - Droplet DigitalBio-Rad QX200 Droplet Digital (ddPCR) PCR SystemProvides absolute quantification of target DNA or RNA molecules for EvaGreen or probe-based digital PCR applications.
DNA SequencerIllumina - NextSeq550The NextSeq550 Next Generation Sequencing system is a high throughput bench top sequencer that provides accurate fast sequencing data, and by employing flexible run configurations it can be easily adopted to a researcher’s needs depending on their required read length and sequencing depth. Reagents are available in a mid-output and a high output mode resulting in maximum cluster numbers of 400 million (high output) and 130 million (mid output) clusters (reads).
Microplate ReaderBioTek Synergy H1 Hybrid Multimode (H1MM) Microplate ReaderUV-Vis absorbance, Fluorescence intensity, Luminescence, Fluorescence polarization, Time-resolved fluorescence. Cell based assays, Biomarker assays, Micro-volume analysis of nucleic acid and protein, Kinetic assays.

Genomics Laboratory - Providence VA Medical Center

(last updated 2022-03-14 09:25:39)
»See Genomics Laboratory - Providence VA Medical Center website for more details

Contact: John McGeary, PhD

Location: Research Building 32, Room 146  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
AutoclaveTuttnauer Equipment: consumable sterilization
Bioanalyzer Agilent BioanalyzerDNA size & quantification (quality check for downstream analyses, i.e. next gen sequencing)
Analyzer - GeneticApplied Biosystems 3500 Genetic AnalyzerCapillary Electrophoresis - Analyze fragment length polymorphisms (96 format) (2)
CentrifugeEppendorf Refrigerated Centrifuge Alcohol precipitation
Centrifuge EppendorfFor centrifuging 96/384 plates
DNA SequencerIon Gene Studio/S5 with Ion Chef/ThermoFisherNext Generation Sequencer
Mass Spectrometer Sequenomhigh throughput SNP genotyping, epigenetics
Microarray ScannerIllumina iScanWhole-genome genotyping, gene expression analysis, methylation analysis
Microplate ReaderBioTekDNA quantification
Microplate ReaderFluidigm End Point Reader High throughput SNP genotyping
PCR Thermal CyclerApplied Biosystems384 well DNA amplification for downstream analysis (i.e. sequenom processes) (2 units)
PCR Thermal CyclerApplied Biosystems96 well DNA amplification for downstream analysis (i.e. fragment length polymorphisms)(2 units)
Robotic Workstation - DNA ExtractionChemagen/Perkin Elmer Magnetic Separation ModuleDNA extraction from blood & saliva
Robotic Workstation - Liquid HandlerSequenom Liquid Handler Transfers PCR chemistries to samples (96/384 format)
Robotic Workstation - Liquid HandlerSequenom NanodispenserDispenses PCR product to Sequenom chip
Robotic Workstation - Sample PreparationIontorrent/Life Technologies Enrichment SystemSimplifies the workflows for the Ion PGM system by providing an automated solution for scalable and reproducible template preparation.
Robotic Workstation - Sample ProcessingThermo Scientific Cap-it-AllCaps tubes to the optimal torque to maintain sample integrity and provide a hands free method to capping and decapping tubes quickly and easily.
Robotic Workstation -Liquid HandlerBeckman Coulter Lab Automation WorkstationAutomated liquid handler
SpectrophotometerThermo Scientific NanoDropDNA quantification
DNA Sequencer
Contact: Kayla Dwyer
Qiagen Pyromark Q96 IDQuantitative analysis of genetic/epigenetic DNA modifications using Pyrosequencing technology
PCR Thermal CyclerApplied Biosystems Real Time PCR Quant Studio 12K FlexAnalyze single nucleotide polymorphisms (single locus) (96/384 format)
Robotic Workstation-Sample PreparationTecan Freedom EvoSimplifies the workflows for the Illumina HiScan system by providing an automated solution for scalable and reproducible sample preparation.

Hospital-Imaging Research and Education Service (HI-RES) Facility

(last updated 2023-03-16 16:18:31)
»See Hospital-Imaging Research and Education Service (HI-RES) Facility website for more details

Contact: John Cronan, MD

Location: Main Building, 3rd Floor  »See on the Map

Affiliated Centers: Carney Institute for Brain Science, Norman Prince Neurosciences Institute

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Analysis - Image Analysis and EducationAdvanced computing for image analysis, an image processing server, conference room and three offices. The Hospital-Imaging Research and Education Service (HI-RES) Facility has two image analysis and education centers, one at Rhode Island Hospital and the other at Butler Hospital. Research mission: To foster collaborative imaging research both in/within stakeholder departments and also to foster collaborative links to Brown University campus-based researchers. This has the potential to include trainees interested in hands-on research projects as well as hospital-based faculty. Education mission: To bolster the interdisciplinary education of hospital-based trainees in the use of imaging, particularly neuroimaging, to advance the understanding of the biological basis of neurodevelopmental disorders. This will include didactic sessions, journal clubs and hands-on sessions with trainees, including medical residents and PhD- trainees.

IDeA COBRE Center for Addiction & Disease Risk Exacerbation (CADRE)

(last updated 2022-06-14 08:50:06)
»See IDeA COBRE Center for Addiction & Disease Risk Exacerbation (CADRE) website for more details

Contact: Jennifer Tidey, Ph.D.

Location: Brown University School of Public Health  »See on the Map

Affiliated Centers: IDeA COBRE Center for Addiction & Disease Risk Exacerbation (CADRE) at Brown University

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Analyzer - Automated Immunoassay System
Contact: CADRE
ProteinSimple - Ella Next Generation ELISA systemThe Ella mutiplex analyzer allows for multi-plexing of multiple biomarkers on the same cartridge. Rather than performing a separate ELISA for each biomarker with more sample volume to run in triplicate, the ELLA can multi-plex biomarkers in triplicate within a single well, increasing the amount of data that can be generated from clinical samples.

IDeA COBRE for CardioPulmonary Vascular Biology Core

(last updated 2022-03-16 08:13:24)
»See IDeA COBRE for CardioPulmonary Vascular Biology Core website for more details

Contact: Valeria Zarate

Location: The Providence VA Medical Center  »See on the Map

Affiliated Centers: IDeA COBRE Center for CardioPulmonary Vascular Biology at Ocean State Research Institute

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Analyzer - Cell MetabolismSeahorse Biosciences - XF Extracellular Flux AnalyzerXF instruments analyze mitochondrial respiration and glycolysis in live cells, generating data in just minutes. XF Technology uses solid-state sensors to simultaneously measure both oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) in every well. All platforms support injection of up to 4 unique compounds per well.
Sensing equipment - Electrical Cell Impedance Sensing (ECIS)Applied BioPhysics, Model 100 and Model ECIS Z ThetaMeasures cell impedance using altering currents across cell monolayers and measuring the change in electrical potential. Impedance is calculated using Ohm's law.
Behavioral Phenotyping - Hypoxia Chamber BioSpherix Rodent Hypoxia Chamber The A-Chamber works with a large range of BioSpherix Ltd. gas controllers. These controllers continuously monitor atmospheric condition, ensuring humane conditions as well as experimental integrity for Hypoxia studies.
Imaging System - Slide ScannerAperio ScanScope CS Digital Slide Scanner CSBrightfield 5 slide scanner with two workstations with Aperio brightfield imaging analysis software.
Imaging System - Slide ScannerAperio Scan Scope FL Fluorescent Digital Slide Scanner5 slide scanner with Indica Labs fluorescence imaging analysis software.
MPVS Ultra Foundation SystemADInstrumentsHigh quality data acquisition device engineered to record precise, reliable, consistent data for research. Together with Millar rodent PV catheters and the LabChart software, the system offers state-of-the-art cardiac hemodynamics and functional measurements across species.
EvaporatorBuchi RotaVapor R215 EvaporatorRotary evaporator for removing solvents.
Imaging System - EchocardiographVisualSonics, Vevo 2100 Imaging SystemA high-frequency, high-resolution digital imaging platform with linear array technology and Color Doppler Mode. The Vevo 2100 Imaging System enables in vivo visualization, assessment, and measurement of anatomical structures and hemodynamic function in longitudinal imaging studies for small animal and zebrafish phenotyping.
Channel Cycling Metabolic SystemOmniTech ElectronicsModel #80 AP4RAT AccuPacer 4 Channel Rat Treadmill and #75 MS8 8For rodent cardiopulmonary exercise testing
Microscope Nikon Ni-E upright research microscope Capture both phase, DIC, brightfield and fluorescence images at high magnification with enhanced features such as Z-stack imaging and multi-channel
SpectrophotometerNanoDrop Measures the concentration of peptides, DNA and RNA, purified protein, nanoparticles, perform protein assays and optical density measurements
MicroCTPerkin ElmerState-of-the-art microCT Imaging System offering longitudinal in vivo imaging as well as ex vivo sample scanning with high speed, high resolution, and low dose scans across multiple species (zebrafish, mouse, rat, guinea pig, rabbit).
High Resolution O2k-FluoRespirometersOrobos InstrumentsDynamically measure metabolic flux (rates) and therefore provide an integrate measure of the dynamics of mitochondrial complex coupled metabolism pathways and function in muscle fibers, cells, or mitochondria. With the fluorescent package, it also allows simultaneously measure mitochondrial H2O2 generation or ATP production.
Imager and Microplate ReaderBioTek Cytation 5 microplate readerImaging plate reader; 5 colors (brightfield, GFP, RFP, DAPI, Cy5) 4x, 10x, 20x objectives.
Imaging system - Laser DopplerMoor instruments, laser Doppler imaging system Laser Doppler Imaging examines blood flow non-invasively. Used to examine blow flow in capillary beds in response to pulmonary hypertension, exercise, and/or ischemia/reperfusion.
Cell Isolation and Tissue Culture CoreServiceThe function of the Cell Isolation and Tissue Culture Core is to provide efficient, economical, and reproducible isolation of pulmonary and cardiac endothelial cells, fibroblasts, vascular smooth muscle cells, epithelial cells, macrophages; propagation, and phenotypic characterization and function.
Organ Function CoreServiceTo provide measurement of heart, lung, and vessel function, in vivo angiogenesis, and transient gene manipulation in vivo. The COBRE Core will provide expertise and state of the art equipment for assessing heart, lung, and vessel function, in vivo angiogenesis, and transient gene manipulation in vivo. The Cell/Organ Core has been measuring heart and lung function using echocardiogram and Flexivent™ methodological approach.
Respiratory CoreServiceThe mission of the Respiratory Core is to develop centralized systems for cardiopulmonary structural/functional assessments and mitochondrial function analysis, with the goal to enhance the productivity and the research impact of CPVB COBRE investigators and others in the state of Rhode Island. We are committed to providing reproducible, economical, and high-quality services. We offer consultation on experimental design, provide cutting edge technological approaches and high-end instrumentation, generate and analyze data.

IDeA COBRE for Stress, Trauma, and Resilience (STAR)

(last updated 2024-03-28 10:32:54)
»See IDeA COBRE for Stress, Trauma, and Resilience (STAR) website for more details

Contact: Pam Borek

Location: Coro West, Suite 309  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
STAR COBRE for Stress, Trauma, and ResilienceClinical Research Resources, Stress, Trauma, and ResilienceThe STAR COBRE aims to foster transdisciplinary collaborations within Brown University, to provide training opportunities for researchers and clinicians who want to address stress and trauma, to enhance partnerships with local and community stakeholders, and to affect policy at the local, national, and international levels.
Technology, Assessment, Data, and Analysis Core (TADA)Clinical Research ResourcesThe TADA Core will offer unique expertise in leveraging technology for observational, laboratory, and intervention studies critical for (1) obtaining ecologically-valid data on stress exposures, behavioral and physiological responses with high temporal resolution, (2) novel approaches to digital phenotyping, and (3) electronically-delivered adaptive interventions.
Community Collaborative CoreClinical Research ResourcesThe Community Collaborative Core will support the overall goals of the STAR COBRE by building critical infrastructure to support clinically significant and highly innovative research with vulnerable children and adults with stress and trauma histories.

IDeA COBRE on Opioids and Overdose

(last updated 2022-06-14 11:48:40)
»See IDeA COBRE on Opioids and Overdose website for more details

Contact: Heather Wunschel

Location: Lifespan - Rhode Island Hospital

Affiliated Centers: IDeA COBRE on Opioids and Overdose at Rhode Island Hospital

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
IDeA COBRE on Opioids and OverdoseClinical Research Resources, Opioids and OverdoseThe COBRE aims to develop and sustain a vibrant interdisciplinary center of research excellence on opioids and overdose. The COBRE will support the selection, mentorship, and career development of junior investigators performing research in the area of opioids and overdose. The Center will bring together an interdisciplinary group of accomplished senior scientists, promising junior investigators, and distinguished advisors and collaborators to work closely together to establish a center of excellence in an area of clinical research that is of critical public health importance.
Data and Research Methods Core
Data and Research Methods Core
ServiceThe Data and Research Methods (DRM) Core provides study design and methodological expertise, delivers data management resources, offers data visualization services, and addresses analytical needs shared by investigators who lack access to these resources within their own research groups.
Translational and Transformative Core
Translational and Transformative Core
ServiceThe Translational and Transformation (T2) Core provides technical assistance in the execution of translation and implementation of science research and supports the dissemination of innovative findings to transform care for opioid addiction and overdose.
Community Engaged Research Core
Contact:
Special Populations Core
ServiceThe Community Engaged Research Core (CERC) provides infrastructure to recruit and retain vulnerable and underserved individuals, builds capacity in the ethical conduct of research with vulnerable populations, and serves as a centralized resource for training and outreach regarding the conduct of research among individuals most impacted by overdose and opioid-related harms.

Imaging and Molecular Biology and Nanomedicine Core

(last updated 2022-03-18 09:27:15)
»See Imaging and Molecular Biology and Nanomedicine Core website for more details

Contact: Lei Wei, PhD

Location: The Coro West Building  »See on the Map

Affiliated Centers: IDeA COBRE Center for Skeletal Health and Repair at Rhode Island Hospital

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Microplate Reader
Contact: Cherie Charbonneau
Molecular Devices SpectraMax M2e plate readerFeatures top and bottom read capability for absorbance, fluoresence, luminescence, and time-resolved fluorescence.
Oven - Hybridization Oven
Contact: Cherie Charbonneau
Fisher Scientific Isotemp hybridization chamber Temperature range of +7C to 85C. Includes a rotisserie.
Incubator - Shaker
Contact: Cherie Charbonneau
Lab Companion SI-600 Incubated ShakerBacterial culture shaker with a temperature of ambient to +60C.
Luminometer
Contact: Cherie Charbonneau
Promega Glomax 20/20 luminometer with printerUltrasensitive luminescence detection in a single microcentrifuge tube (1.5ml) format.
PCR Thermal Cycler
Contact: Cherie Charbonneau
Bioer Life ECO thermal cyclerThis thermal cycler has a 96 well format with a 2C/sec ramp rate.
PCR Thermal Cycler
Contact: Cherie Charbonneau
Applied Biosystems ProFlex thermal cyclerThis thermal cycler has a 3x32 well format that allows for 3 separate programs to be run. The ramp rate is 6C/sec.
PCR Thermal Cycler
Contact: Cherie Charbonneau
Applied Biosystems Veriti thermal cyclerThis thermal cycler has a 96 well format with 3.9C/sec ramp rate.
Imaging System - Gel Imager
Contact: Cherie Charbonneau
LI-COR Odyssey Classic Infared Imaging systemThis near-infared fluorescent detector can be used for quantitative western blots, gel shift assays, coomassie stains, tissue section and small animal imaging.
Imaging System - Gel Imager
Contact: Cherie Charbonneau
UVP GelCam 310 Bioimaging digital gel documentation systemHigh resolution 2.0 GelCam 310 CCD with manual zoom lens for fluorscent and colorimetric gel imaging. EtBr filter included.
PCR Thermal Cycler
Contact: Cherie Charbonneau
MJ Opticon 2 real-time PCR system.This 96-well system accepts low-profile tubes or plates. There are two fluorophore channels with emission spectra in the 523-543 nm range and 540-700nm.
Incubator
Contact: Cherie Charbonneau
(4) NuAire IR water-jacketed CO2 incubators (NU-8500)This incubator provides an optimal in-vitro growth environment for both cell and tissue culture while minimizing dessication through a closed loop HEPA filtration system.
Biological Safety Cabinet
Contact: Cherie Charbonneau
(4) NuAire Bio Safety Cabinets (Class II, Type A/B3)These biological safety cabinets reduce exposure to airborne biological or particulate chemical agents in low to moderate risk-hazard research and/or drug preparations.
Centrifuge
Contact: Cherie Charbonneau
Sorvall Legend X1R centrifugeProcess samples for diverse laboratory applications with rotors for 1.5ml eppendorf tubes, 15, and 50ml conical tubes. Refrigerated with a max speed of 152000 rpm.
Autoclave
Contact: Cherie Charbonneau
Amerex HVE-50 top loading autoclave sterilizerThis is a 50L, self-contained, portable, top-loading autoclave with auto-exhaust and warming cycles.
Microscope
Contact: Cherie Charbonneau
Nikon Eclipse TS-100F Inverted MicroscopeThis phase contrast microscope used for tissue culture is also equipped with FITC and TRITC filters to capture fluorescent images in SPOT imaging software.
Microscope
Contact: Cherie Charbonneau
Nikon Eclipse 90i Upright Research MicroscopeThis microscope is equipped with two cameras (color and monochromatic) and is ideal for brightfield and/or epi-fluorescent images of whole tissues etc with 4x, 10x, 20x and 40x dry objectives. The filter cubes available are DAPI, FITC, and TRITC.
Fluorescence Activated Cell Sorter (FACS)
Contact: Cherie Charbonneau
Becton Dickinson - Accuri Flow CytometerThis system is equipped with a blue and red laser, two light scatter detectors, and fluorescence detectors with optical filters optimized for FITC, PE, PerCP, and APC. The user does not need to adjust detector voltages and there is a wide dynamic range of digitally collected data (7.2 decades).
Bioanalyzer
Contact: Cherie Charbonneau
Invitrogen Luminex 200 with xMap technology This is a versatile, efficient standard in multiplexing with the ability to use magnetic or polystyrene beads on up to 100 targets/sample.
pH Meter
Contact: Cherie Charbonneau
Orion pH meter 920pH range of -2 to 19.99 and oxygen range of -2 to 19.99ppm. Autocalibration buffers of 4.01, 7, and 10.01.
pH meter
Contact: Cherie Charbonneau
Hanna Instruments 2209This pH meter features manual pH calibration and temperature compensation.
Microtome
Contact: Cherie Charbonneau
Thermo Scientific Shandon Finesse 325 manual microtomeWith a lightly balanced flywheel it is ideal for routine paraffin sectioning.
Sample Preparation - Cutter
Contact: Cherie Charbonneau
Buehler-Isomet CutterThe IsoMet Low Speed Cutter is a precision sectioning saw designed for cutting various types of materials with minimal deformation. Its low kerf loss capability and great versatility in holding all types of sample shapes and configurations, gives today's laboratory a precision sectioning tool capable of cutting viturally any material including brittle or ductile metals, composites, cements, laminates, plastics, electronic devices and biomaterials. The Cutter is equipped with a diamond studded carborundum wheel and Buehler Ecomet 4 grinder/polisher with Automet 2 powerhead.
Imaging System
Contact: Cherie Charbonneau
PerkinElmer FMT 4000 Fluorescence Tomography System.The FMT 4000 fluorescence tomography imaging system provides the greatest utility of the FMT Systems with the ability to quantitate up to four fluorophores simultaneously. The system comes with four excitation laser channels (635, 680, 750, and 790 nm) and is useful for a range of applications including oncology, inflammation, and cardiovascular disease. It is ideal for researchers who are well-versed in 3D fluorescence tomography and require the widest range of in vivo applications and imaging agents.
Imaging System
Contact: Cherie Charbonneau
Faxitorn Pre-clinical imaging systemUltra-high resolution x-ray imaging is an important tool in investigating a variety of disease states. From metastatic cancer to arthritis and osteoporosis, small animal models are commonly used. Both in vivo and ex vivo planar imaging is used to screen, track, and evaluate structural changes in these studies. Cabinet x-ray systems allow researchers to take images directly in the vivarium to protect the integrity of the colony. These planar imaging systems are less expensive, subject animals to lower doses, and provide faster results than microCT systems.
Incubator
Contact: Cherie Charbonneau
GQF 1502 Sportsman egg incubatorThis is a complete incubator and hatching system with 3 automatically turned racks. It has an accurate digital thermostat with LCD of humidity and temperature.
Homogenizer
Contact: Cherie Charbonneau
Fisher Scientific, Powergen 125 Tissue HomogenizerProcess volumes from 0.03 to 100mL. Variable speed control to 30,000rpm for efficient cell disruption. Disposable plastic generators eliminate sample cross-contamination. Flat-bottom stainless-steel generators process liquid or soft tissues.
Microscope
Contact: Cherie Charbonneau
Olympus SZ61 Zoom StereomicroscopeGreenough design with two optical paths inclined at an inward angle. Magnification range 0.67X to 4.5X; zoom ratio 6.7:1; FN 22. Working distance of 100mm; observation tube angle 45 degrees; right and left eyepiece tubes interlocked; interpupillary distance adjustment 50-76mm; forward positioned zoom adjustment knobs with zoom magnification graduations. With 0.5x cmount for documentation.
Chemical Hood
Contact: Cherie Charbonneau
Thermo Scientific Hamilton SafeAire IIChemical hood and ultra-high vacuum system for organic synthesis
Evaporator
Contact: Cherie Charbonneau
Buchi R-124 RotavaporRotary evaporator comes complete with a 45 degree water condenser and a 1L condensing and evaporating flask.
Sample Preparation - Circulator
Contact: Cherie Charbonneau
VWR Recirculating Chiller, Model 1160AStable cooling for many common heat removal applications such as rotary evaporators and vacuum systems (-10 to 40C).
High Performance Liquid Chromatography (HPLC)
Contact: Cherie Charbonneau
Agilent Technologies, 1260 Infinity HPLC systemA maximum pressure of 600 bar to utilize smaller particle size columns for higher resolution and faster separations.
Disrupter
Contact: Cherie Charbonneau
Qsonica 700W sonicator with 5.5" cup hornThis sonicator has full amplitude control from 1-100%.
Imaging System
Contact: Cherie Charbonneau
Xtreme back illuminated 4MP with x-ray for small animal imaging High sensitivity luminescence, fluorescence, radioisotopic, and radiographic imaging for up to 5 mice at a time. Isofluarne and temperature controlled chamber for the mice.
PCR Thermal Cycler - Digital
Contact: Cherie Charbonneau
RainDrop Digital PCR by RainDanceThe RainDrop is composed of a Source instrument that can generate 10million droplets/sample and the Sense instrument, which can detect whether the PCR reactions are positive or negative for your fluorophore. Multiplexing is possible for the 8 samples that are run at a time on the microfluidics chip.
PCR Thermal Cycler
Contact: Cherie Charbonneau
Bio-Rad CFX96 Real-Time PCR systemThis real-time PCR instrument allows for up to 5-target multiplexing in sample volumes as small as 10ul. It also has a thermal gradient feature in a 96-well format.
Spectrophotometer
Contact: Cherie Charbonneau
Thermo Scientific NanoDrop 2000cThis is a full spectrum, UV-Vis spectrophotometer used to quantify and assess the purity of DNA, RNA, protein, and more at sample volumes as low as 0.5ul.
Bioreactor
Contact: Cherie Charbonneau
Flexcell FX5000 Tension SystemThis is a computer-regulated bioreactor that uses vacuum pressure to apply either cyclic or static strain to cells cultured on flexible-bottomed culture plates.
Sample Preparation - Freeze Dry System
Contact: Cherie Charbonneau
Labconco FreeZone Plus 2.5L Cascade Benchtop LyophilizerThis system is for light sample loads with low eutectic points. It can remove up to 1.8L of water in 24hrs and holds 2.5L of ice before defrosting is required.

In Vivo Optical Imaging Shared Resources (Legorreta Cancer Center at Brown University)

(last updated 2023-06-09 15:27:08)
»See In Vivo Optical Imaging Shared Resources (Legorreta Cancer Center at Brown University) website for more details

Contact: Arunasalam Navaraj, PhD

Affiliated Centers: Legorreta Cancer Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Training and Technical AssistanceServiceAdvise investigators with experimental design for in vivo imaging applications, provide access to instrumentation and training. Assist investigators with in vivo mouse, organ or cellular imaging, probe selection, antibody labeling, image analysis and presentation. Provide support for grant submissions.

Infectious Diseases Clinical Research Program - The Miriam Hospital

(last updated 2024-03-28 10:19:13)
»See Infectious Diseases Clinical Research Program - The Miriam Hospital website for more details

Contact: Pamela Poethke, RN

Location: Fain Building  »See on the Map

Affiliated Centers: AIDS/HIV Immunology Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Research - Infectious Diseases Clinical Research Resources
Contact: Karen Tashima
Clinical Trials Support, HIV and HCVThe Miriam Hospital clinical trials unit offers the newest treatments for HIV and hepatitis C (HCV) infections. The experienced research staff consists of physicians, nurses, a data manager, a regulatory assistant and laboratory personnel. The unit conducts trials offered through the AIDS Clinical Trials Group (ACTG) network, funded by the National Institutes of Health, in association with the Partners/Harvard AIDS Clinical Trials Unit. The priority of ACTG studies is to evaluate new strategies for treating HIV infection and preventing HIV complications, and to evaluate new treatments for hepatitis C. Other studies offered through our clinical trials unit include pharmaceutical studies to treat hepatitis C, prevent C. difficile infection, and test new methods of diagnosing HIV infection.

Joint Engineering Physics Instrument Shop (JEPIS)

(last updated 2022-03-18 09:15:32)
»See Joint Engineering Physics Instrument Shop (JEPIS) website for more details

Contact: Michael Packer

Location: Institute for Molecular & Nanoscale Innovation (IMNI), Room 220, Prince Lab  »See on the Map

Affiliated Centers: Instrumentation for Molecular and Nanoscale Innovation (IMNI)

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Fabrication - Machine ShopService that provides machine shop capabilitiesThe Joint Engineering Physics Instrument Shop (JEPIS) is a specialized service center providing assistance in the development of experimental instruments, research projects and instructional classes. The JEPIS services are offered to faculty, students and staff on the Brown University campus, and is also available to outside academic/hospital users. JEPIS offers all of the basic machine shop capabilities, including Wire EDM and Rapid Prototype printing. JEPIS also offers CNC design consultation, hands on training and instruction through non-credit basic machine shop course and an advanced course geared toward Graduate Students. The Student Shop provides students with a strong base for their experimental studies. The JEPIS staff is available to give general advice and assistance to the Brown Students and Staff in the finding of sources for the materials and devices they require for their projects or instructional classes. Access to the facility is on a user fee basis of an hourly fee for labor plus materials.

Leduc Bioimaging Facility

(last updated 2022-01-20 12:25:55)
»See Leduc Bioimaging Facility website for more details

Contact: Robbert Creton, PhD

Location: Room 121, Sidney Frank Hall  »See on the Map

Affiliated Centers: Rhode Island Consortium for Coastal Ecology Assessment Innovation and Modeling (RI C-AIM)

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Software - AnalysisSoftware: Amira 2019Software for image analysis and 3D visualization
Sample Preparation - Critical Point DryerLadd Research IndustriesRemoves liquid from biological specimens for SEM
Sample Preparation - Glow Discharge UnitEmitech K100XAdds a charge to make TEM samples hydrophilic
Microscope - MultiphotonOlympus FV-1000-MPE Multiphoton Laser Scanning MicroscopeDeep optical sectioning of fluorescently labeled samples with SIM photoactivation
Microscope - FluorescenceZeiss Axiovert 200M FluorescenceImaging of samples labeled with fluorescent indicators
Microscope - FluorescenceZeiss Axiovert 200M FluorescenceImaging of samples labeled with fluorescent indicators
Microscope - ConfocalOlympus FV3000 Confocal MicroscopeOptical sectioning of samples labeled with fluorescent indicators. Equipped with a resonant scanner for fast optical sectioning
Microscope - ConfocalZeiss LSM 710 ConfocalOptical sectioning of samples labeled with fluorescent indicators
Microscope - FluorescenceZeiss Lumar Stereo FluorescenceImaging of samples labeled with fluorescent indicators
Microscope - ElectronThermo Apreo VS Scanning Electron Microscope (SEM) for serial block-face imagingEquipped for standard scanning electron microscopy as well as serial-block face imaging. The automated system is capable of imaging large z-stacks at isotropic 10x10x10 nm resolution. The series of images can be processed for 3D reconstruction of cells and tissues, with sufficient resolution to identify small vesicles, organelles and neural connections.
Thermo Tundra Cryo-TEM
Contact: Robbert Creton
MicrotomeReichert UltramicrotomeUltrathin sectioning for light microscopy and transmission electron microscopy
Microtome Diamond Knife SetDiatome DKSUsed on Reichert microtome to cut ultrathin sections for TEM
Sample Preparation - Sputter Coater SystemEmitech K550Covers an EM specimen with a thin layer of conducting material
Training and Technical Assistance - BioimagingService Service to provide Bioimaging technical assistance and training
Microscope - Slide ScannerOlympus VS200Automated slide scanner for imaging fluorescence and brightfield (e.g. H&E slides) in the Laboratories for Molecular Medicine (LMM)
Microscope - FluorescenceNikon Ti2-E Fluorescence MicroscopeMotorized fluorescence microscope with Perfect Focus System and software for high-content screening and 2D/3D deconvolution.
Microscope - ConfocalZeiss LSM 800 Confocal Optical sectioning of samples labeled with fluorescent indicators
MicrotomeLeica EM UC7 UltramicrotomeBiological TEM and SBF prep
High-Content Screening System
Contact: Samantha Madnick
Opera Phenix High-Content Screening System Website
PerkinElmer Opera Phenix High Content Screening SystemMicroscope designed for high-throughput 3D imaging of fluorescent samples in microplates.
Microscope - FluorescenceNikon Ti2-E Fluorescence Microscope for high-content imagingThe Nikon Ti2-E fluorecence microscope is a high-content imaging system, based on an inverted microscope and equipped for imaging standard slides, culture dishes, and microplates (e.g. 96-well plates). The microscope includes 'Perfect Focus' for autofocus applications, a Photometrics Prime 95B sCMOS camera for imaging fluorescence, a 16 megapixel Nikon DS-Ri2 color camera for imaging histology slides, a motorized stage and NIS-Elements High Content (HC) software for multiwell plate acquisition.
Microscope - ConfocalZeiss LSM 880 ConfocalOptical sectioning of samples labeled with fluorescent indicators
Microscope - Slide ScannerOlympus VS200Automated slide scanner for imaging fluorescence and brightfield (e.g. H&E slides) located in the BioMed Center.

Lentivirus Construct Shared Resources (Legorreta Cancer Center at Brown University)

(last updated 2023-06-09 15:27:54)
»See Lentivirus Construct Shared Resources (Legorreta Cancer Center at Brown University) website for more details

Contact: Olin Liang, Ph.D.

Location: CORO West Research Building, Suite 5.17J  »See on the Map

Affiliated Centers: IDeA COBRE Center for Stem Cells and Aging at Rhode Island Hospital, Legorreta Cancer Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Lentivirus-mediated Stable Gene Over-expression in CellsService
Lentivirus-mediated CRISPR/Cas9 Gene Knock-out in CellsService
Site-directed MutagenesisService
Virus PackagingService
Design and production - COVID-19 PseudovirusService
Cell entry assays - COVID-19 PseudovirusService
SARS-CoV-2 spike and human ACE2 constructsService

Lifespan Biostatistics, Epidemiology, and Research Design (BERD)

(last updated 2022-03-18 10:00:14)
»See Lifespan Biostatistics, Epidemiology, and Research Design (BERD) website for more details

Contact: Jason Machan, PhD 

Location: 130 Plain Street Providence, RI 20903  »See on the Map

Affiliated Centers: IDeA Advance RI-CTR (Clinical Translational Research) at Brown University, Lifespan Clinical Research Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Technical Assistance - Biostatistics, Epidemiology, and Research Design Consulting
Contact: Jason Machan, PhD 
ServiceThe Biostatistics, Epidemiology, and Research Design (BERD) Core at Rhode Island Hospital offers centralized biostatistics consultation services to clinical, basic, and translational researchers. We provide a broad array of resources during all phases of research. During planning, the core can provide high quality project/trial design, including final sculpting of specific aims and hypotheses, measure selection, power analysis, data analysis planning, and grant/proposal preparation. At the beginning of the project, the core can assist in construction of REDCap data collection tools, databases, and data management, including national archiving. We provide help navigating approvals for special technology needs, such as purchasing non-standard equipment and logistics. Throughout the trial, the core can provide decision support, assessing the impact of potential design additions or changes on final statistical inference. It can serve on or help find individuals to serve on data and safety monitoring boards (DSMB). At the conclusion of the trial, the core can assist with implementation of the data analysis plan, either by providing access to contemporary statistical analysis software and coaching, or by conducting analyses for or with investigators. During reporting/publication preparation, the core can assist in write-up, data visualization, and integration of interpretations in the broader context of the project, and help address comments from peer reviewers.

Magnetic Resonance Imaging (MRI) Facility

(last updated 2022-03-18 08:54:57)
»See Magnetic Resonance Imaging (MRI) Facility website for more details

Contact: Michael Worden, PhD

Location: Sidney Frank Hall  »See on the Map

Affiliated Centers: Carney Institute for Brain Science

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Imaging System - Magnetic Resonance Imaging (MRI) ScannerSiemens 3 Tesla Prisma fitBrain structure and function in normal and clinical populations as well as studies of other body systems, non-invasive animal imaging and materials science.

MakerspaceURI

(last updated 2022-03-14 10:35:26)
»See MakerspaceURI website for more details

Contact: makerspace@etal.uri.edu

Location: Room 165, Carothers Library & Learning Commons  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Imaging System - 3D ScannerEinScan Pro 2X
Tools - Router - computer numerical control (CNC)Inventables X-Carve
Cutter - Laser GCC Laserpro Spirit LS
Imaging System - Audio|Visual - VR HeadsetsHTC Vive Pro (3); Oculus Quest 2 (2)
Sewing Machines/ EmbroideryBrother XM2701 Sewing Machine (2), Brother PE-770 Embroidery System
Imaging System - 3D PrinterMakerbot Replicator+ (2); Dremel 3D20 (9); TAZ Workhorse; Formlabs (2)
Computer - TabletsIPad 7th Gen (4), Microsoft Surface
Imaging System - CameraSony Alpha a6400 Mirrorless Digital Camera (with a tripod and accessories)
ComputersDELL high-performance PCs (4), Alienware PC (3)
Vacuum FormerVaquform DT2
Cutter - VinylGCC Expert Pro Vinyl Cutter, Cameo Silhouette (2)

Mansfield Bio-Incubator

(last updated 2022-02-16 09:35:15)
»See Mansfield Bio-Incubator website for more details

Contact: Alexander Margulis, PhD

Location: 241 Francis Avenue  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Workstation - Laboratory and office space
Mansfield Bio-Incubator 2020 Rates
Mansfield Bio-IncubatorMansfield Bio-Incubator is a non-profit organization whose mission is to facilitate and assist the creation, growth, and success of the next generation of biotech companies. Our incubator assists these companies and nurtures entrepreneurial and economic development in the community by maintaining affordable lab and office space, services, training, mentoring, and a network of professional advisors. Shared and private office and lab space are available, with additional space coming online in 2021. More information on the membership rates can be found here. https://www.bioinc.org/membership-rates-2
Chemical HoodLabconco Protector Premier Fume HoodSuitable for providing personal protection needed for general chemistry applications involving fumes and vapors.
Biological Safety CabinetLabconco Purifier Logic Series Biological Safety CabinetProvide personnel, product and environmental protection from hazardous particulates and agents that require biosafety level 1 or 2 containment.
Incubators (2)VWR Symphony CO2 incubatorCO2 incubators designed to maintain adequate interior moisture to prevent the drying out of cultures. 
PCR Thermal CyclerIllumina Eco real-time PCR systemThe Eco Real-Time PCR System offers life science researchers a full-featured real-time PCR system at an attractive price. Its features include:  Four-color multiplexing  High Resolution Melt (HRM)  Fast PCR cycling: 40-cycle PCR in 40 minutes  User-friendly, MIQE-compliant software.
Mass Spectrometer Agilent LC/MSD VL mass spectrometerThe Agilent 1100 Series LC/MSD offers you the sensitivity, selectivity, and depth of molecular information inherent in mass spectrometry—in a package that is rugged, reliable, and surprisingly easy to learn, operate, and maintain
Microplate Reader - FluorescenceFluoroskan AscentMeasures sample fluorescence Excitation wavelengths 320-700 nm, emission 360-700 nm
High Performance Liquid Chromatography (HPLC)Agilent 1100 HPLC system
BioBank - Biospecimen Banking - FreezerNuAire -85C Ultralow Temp FreezerSample storage
BioBank - Biospecimen Banking - FreezerKenmore -20C FreezerSample storage
BioBank - Biospecimen Banking - Refrigerator4C Glass DoorSample storage
LuminometerDigene DML 2000 luminometerThe DML 2000 instrument is a luminometer that automates amplified chemiluminescent signal detection and results reporting for Hybrid Capture 2 (HC2) assays,

Marine Science Research Facility

(last updated 2022-03-18 08:45:02)
»See Marine Science Research Facility website for more details

Contact: Dawn Outram

Location: Aquarium Building  »See on the Map

Affiliated Centers: Rhode Island Consortium for Coastal Ecology Assessment Innovation and Modeling (RI C-AIM)

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Sensor - Oxygen SensorPreSensWater phase analysis
Analyzer - Dissolved Gas Bay Instruments Membrane Inlet Mass Spectrometer- Dissolved Gas AnalyzerMass Spectrometer: Quantifies dissolved gases
Analyzer - Multiparameter Water AnalyzerYSI Professional Plus Hand Held Multiparameter Water Meter Measures temperature, salinity, dissolved oxygen (DO), and pH
Analyzer - NutrientLachat QuickChem 8500 Flow Injection Nutrient Auto AnalyzerMeasures dissolved nutrients in water, Ammonia, Phosphate, Nitrite, Nitrate, and Silicate
Aquatic Culture - Algae and Live Feed Room
Contact: Ed Baker
Various manufacturersK-walls, small rearing tanks for live feed, flowing seawater and freshwater
Aquatic Culture - Phytoplankton Culture Wheels
Contact: Ed Baker
Various manufacturersMotorized and water driven, clear plexiglass, ambient and experimental temperature control, can accommodate culture bottles of differing sizes (1-3L)
Aquatic System - Dechlorination System - Freshwater
Contact: Ed Baker
Various manufacturers2 Freshwater dechlorination tanks
DisrupterBiospec Mini Bead BeaterShakes tubes with beads to disrupt cells, DNA , RNA
DisrupterBranson Digital Ultasonic Liquid SonifierDisrupts cells
Workstation - Environmental Chamber
Contact: Ed Baker
EnvironAir Environmental Chamber100 sq ft Temperature control, Two range 4-24 C, Two range -4-24 C (to simulate polar conditions), On generator back up and emergency monitoring systems. (4 Units)
Aquatic System - Flowing Seawater System
Contact: Ed Baker
Various manufacturersRaw-Ambient temperature and Filtered- Chilled, Heated, Ambient. UV treated, air supply, emergency monitoring systems
Fluorescence Activated Cell Sorter (FACS)Becton Dickinson (BD) Biosciences Influx Flow Cytometer and Cell SorterMeasures light scatter and fluorescence of cells. Sorts cells based on measured properties.
FluorometerSatlantic Fluorescence Induction Relaxation Fluorometer (FIRE)Measures variable fluorescence in phytoplankton
FluorometerTurner Designs 10-AU (Chlorophyll) Field Fluorometer Measures extracted or in vivo chlorophyll fluorescence of samples, Field-portable, can be set up for continuous-flow monitoring or discrete sample analyses
FluorometerLife Technologies Qubit FluorometerQuantifies DNA, RNA, and protein
Biospecimen Banking - Freezer - Walk-in
Contact: Ed Baker
-20 C Walk-In Freezer185 sq ft Long term storage, On generator back up and emergency monitoring systems
HomogenizerPolytron Homogenizer PT-10-35-GT Breaks down plant and animal tissue for analysis, and performs homogenization, dispersion, mixing, and prepares emulsions
Cell CounterSizing and counting of particles suspended in liquid samplesBeckman Coulter Multisizer 4
Imaging System - CameraOlympus EP50 Microscope Camera w/ HDMI MonitorCaptures Microscope video and still images (C-mount)
Analyzer - Fluid Particle Counter and ImagerFluid Imaging Technologies FlowCam Imaging Particle Analysis: counts and records images of particles in liquid samples
IncubatorPercival Incubator/Growth ChamberTemperature and light controlled incubator for environmental applications
Microplate ReaderMolecular Devices Spectramax M5 Measures Fluorescence Intensity, Absorbance, Time Resolved Fluorescence, Fluorescence Polarization and Luminescence in cuvettes and multiple sized microplates.
MicroscopeNikon inverted MicroscopeMicroscopy. Works with Olympus EP50 Camera
MicroscopeOlympus SZX16 Stereo MicroscopeMicroscopy. Works with Olympus EP50 Camera
PCR Thermal CyclerEppendorf Master Cycler Pro Replicates DNA
PCR Thermal CyclerStratagene QPCR Mx3000PAnalysis of gene expression, microarray data validation, SNP genotyping, pathogen detection, DNA methylation analysis, and chromatin immuno-precipitation studies. Quantitative PCR Filters- FAM/Syber Green, Rox, Hex, CY3, CY5
Photoperiod controller
Contact: Ed Baker
Various manufacturersWattstopper controller(Blount), Various individual timers
Pier Access
Contact: Ed Baker
Access to Graduate School of Oceanography pierAccess to pier for deployment, collection, testing. Water depths 18-15 feet to intertidal zone
Radiometer Biospherical Instruments Quantum Scalar Laboratory (QSL) Radiometer - PAR Light Meter Measures Photosynthetically Active Radiation (PAR)
Incubator - ShakerThermo Max-Q Orbital Shaker Table Orbital shaker with 18x24 in platform and variety of clamps
Incubator - ShakerThermo Max Q Incubated ShakerHeated incubated shaker
SpectrometerOcean Optics Jaz SpectrometerOptical sensing instrumentation that measures light wavelengths. Its unique features and expandable platform makes it uniquely suited for field applications, remote sensing, process flow and quality assurance.
SpectrophotometerThermo Scientific NanoDrop 1000Microvolume UV-Vis spectrophotometer that quantifies DNA, RNA, and protein from small 1-2 microliter sample size
Aquatic System - Laminar Flow Tank
Contact: Ed Baker
Laminar Flow Tank1000 gal, Seawater or Freshwater, Multiple speeds with precision control. Experimental chamber visable from 5 sides
Aquatic System - Mesocosm Tank
Contact: Ed Baker
Various manufacturers10, 5 ft deep outdoor mesocosms, with available raw ambient seawater flow
Vacuum Manifold
Contact: Rodrigue Spinette
Vacuum Filter Manifold Allows for filtration of 5 ports simultaneously, 25 and 47 mm filter cups available
Worksation - Marine General Wet Lab
Contact: Ed Baker
Various manufacturers3 Buildings, 7,000 sq ft indoor, and nearly unlimited outdoor space, Multiple insulated tank sizes, various sized aquaria, possible to perform simultaneous replicates
Workstation - Marine Pathology and Transgenics Laboratory and Systems
Contact: Ed Baker
Various manufacturersOzone treated effluent and separate effluent drain
MicroscopeNikon Eclipse Ni epifluorescence microscopeEpifluorescence and phase microscopy with digital camera system
Gas Chromatograph - Mass Spectrometer (GC - MS)
Contact: David Adelman
Agilent Technologies 7890B/5977A GC/MSDIdentifies and enumerates chemical constituents of samples
Imaging System - Gel Imager Fluorescence gel imaging systemCarestream Molecular Imaging Gel Logic 212 Pro
FluorometerTurner Designs TrilogyMeasures extracted or in vivo chlorophyll fluorescence of samples, Field-portable

Mass Spectrometer Analytical Facility

(last updated 2022-03-18 09:21:29)
»See Mass Spectrometer Analytical Facility website for more details

Contact: Soumen Mallick

Location: GeoChemistry, GC040  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Mass Spectrometer
Contact: Alberto Saal
Thermo Scientific Multi-collector inductively coupled plasma mass spectrometer, ICP-MS, Neptune PlusThis is a multi-collector ICP-MS equipped with nine Faraday cups and eight ion counters, which allows us to monitor multiple masses simultaneously providing precise isotope ratio measurement.
Mass Spectrometer
Contact: Alberto Saal
Thermo Scientific Quadrupole inductively coupled plasma mass spectrometer, ICP-MS, X-series-2This is a single collector ICP-MS that allows us to measure precise elemental composition at sub-ppb level concentration.
Analyzer - Laser Ablation
Contact: Alberto Saal
Photon-machines Analyte G2, 193 nm excimer laser ablationThis 193 nm wave-length excimer laser allows us to perform in-situ analysis on a solid sample with a beam diameter as small as 3µm. To determine the elemental abundances the laser is coupled with the single collector inductively coupled plasma mass spectrometer ICPMS and to determine the isotope ratios the laser is coupled with multi collector ICPMS.
Workstation - Clean lab, metal free
Contact: Alberto Saal
Pico Trace Clean LabThis Clean Lab is equipped with Millipore water filtration system that provides greater than 18MΩ Milli-Q water. The working stations in this Clean Lab meet ISO class 4 standard (equivalent to FS class 10) allowing us to perform ultra-low blank chemical analysis.

Mass Spectrometry Facility (Brown Chemistry)

(last updated 2022-03-15 08:14:44)
»See Mass Spectrometry Facility (Brown Chemistry) website for more details

Contact: Lisa Chen

Location: MacMillan Hall  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Gas Chromatograph - Mass Spectrometer (GC - MS)Hewlett-Packard (Agilent) 6890 GC/5973 MSDThis system is suitable for separation of complex mixtures by gas chromatography (GC) and identification by mass spectrometry. It is limited to low molecular weight and volatile molecules (mass range 450 Da).
Liquid Chromatography - Mass Spectrometer (LC - MS) Agilent 6530 Mass QTOFThis system consist of Agilent 1260 infinite HPLC and Agilent 1260 infinite nanoglow LC/chipcube nanoelectrospray MS interface, and 6530 Accurate Mass Q-TOF mass spectrometer. This instrument can detect and identify compounds in amounts smaller than two trillionths of a gram (2 picograms), making the Agilent 6530 a powerful tool for food safety, toxicology and other measurements where minute amounts of compounds must be identified.
Mass SpectrometerThermo LXQ linear ion trap with Surveyor HPLC systemThe LXQ has capabilities similar to the conventional 3D ion trap such as LCQ Deca. It is based on linear ion trap technology that has faster cycle time. It is capable of data-dependent LC/MSn analysis.
High Performance Liquid Chromatography (HPLC) - Analytical and preparative HPLCAgilent 1260 Infinity LCThe 1260 HPLC is used primarily for analytical and semi-prep scale HPLC separation and purification of components in chemical mixtures.  This system consisted a quaternary pump, autosampler, thermostatted column compartment, diode array detector (190 – 950 nm), and fraction collector.
Liquid Chromatography - Mass Spectrometer (LC - MS)Agilent 6230 Mass QTOFThis 6230 time-of-flight LC-MS system couples accurate mass TOF with the 1260 Infinity II liquid chromatography, which is equipped with dual electrospray (ESI) ion source and Multiple Wavelength UV Detector (MWD). This TOF LC/MS achieves resolution up to 20,000 (FWHM) and sub 1-ppm mass accuracy. It is capable of screening, profiling and identification of small molecules, large biologic compounds, and everything in between.
Mass SpectrometerBruker Autoflex Speed Linear (L) Matrix Assisted Laser Desorption Ionization-Time of Flight mass spectrometer (MALDI-TOF MS).The Bruker autoflex Speed is a linear time-of-flight (TOF) mass spectrometer equipped with a matrix-assisted laser desorption ionization (MALDI) ion source. This instrument is routinely used for analysis of organic molecules, natural products, and macromolecules, including recombinant proteins, oligonucleotides, polysaccharides and synthetic polymers.
Gas Chromatograph - Mass Spectrometer (GC - MS)Agilent 5977A GC/MSD SystemThis system is suitable for separation of complex mixtures by gas chromatography (GC) and identification by mass spectrometry. It is limited to low molecular weight and volatile molecules (mass range 1050 Da).

Molecular Pathology Core - Brown

(last updated 2022-02-16 09:27:26)
»See Molecular Pathology Core - Brown website for more details

Contact: David Silverberg

Location: Laboratories for Molecular Medicine, Room 539  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Histology/Tissue Processing - Tissue Sample Processing and EmbeddingServiceParaffin Processing and Embedding- automated and manual, Plastic Processing and Embedding, TEM and SEM Processing and Embedding, Frozen Tissue-Embedding in OCT Block, Sample Preparation for Serial Blockface Imaging
Histology/Tissue Processing - SectioningServiceParaffin sectioning, plastic sectioning, Frozen/Cryostat prep and sectioning, TEM ultrathin sectioning, Vibratome, Serial and Step sectioning
Paraffin Embedding WorkstationLeica EG1150C Paraffin Embedding CenterParaffin embedding
MicrotomeLeica RM2265 Automated MicrotomeParaffin and plastic sectioning
CryostatLeica CM3050S CryostatSectioning of fixed and unfixed frozen samples
VibratomeLeica VT 1000S VibratomeSectioning of fixed samples
Biospecimen Banking - FreezerRevco -80 degree C FreezerTemporary Sample storage
MicroscopeNikon Eclipse 50i light microscopeCollaborative analyses of histological slides and digital imaging capability
Histology/Tissue Processing - StainingServiceHematoxylin and Eosin (H&E), Periodic Acid Schiff (PAS), Masson's Trichrome, Special Stains
Histology/Tissue Processing - ImmunolabellingServiceImmunohistochemistry, Immunocytochemistry, Immunofluoresence, Immunogold, TUNEL Assay

Molecular Pathology Core Laboratory - Rhode Island Hospital

(last updated 2024-04-01 12:59:29)
»See Molecular Pathology Core Laboratory - Rhode Island Hospital website for more details

Contact: Evgeny Yakirevich, MD

Location: Aldrich Building , 6th Floor, Rhode Island Hospital Campus  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
MicroscopeOlympus BX40 General Use Microscope
BioanalyzerAgilent Bioanalyzer 2100The Agilent 2100 Bioanalyzer system provides sizing, quantitation and quality control of DNA, RNA, proteins and cells on a single platform, providing high quality digital data.
Biological Safety CabinetHEPA filter and NuAire laminar flow hood Filter capable of removing 99.97% of particles greater than 0.3 micronss.
Biospecimen Banking - FreezerThermoForma Freezer - 80 C #8606Sample storage
Biospecimen Banking - FreezerThermoForma Freezer -20 C #3801Sample storage
Biospecimen Banking - RefrigeratorThermo Scientific TSX Series 4 FReagent Storage
Biospecimen Banking - FreezerThermoForma Ultra 932 Lo Freezer -80 C (2) Sample storage
CentrifugeEppendorf 5424 MicrocentrifugeAerosol-tight rotor. Max rcf: 20,238 x g. Automatic lid opening following application sequence. Low access height: 23 cm. Short spin, rpm/rcf setting as required
CentrifugeThermoForma refrigerated MicrocentrifugeWorking temperatures from -5 C to +40 C.
CryostatLeica Cryostat CM1850Frozen Tissue Sectioning. UVC disinfection and AgProtect minimizes contamination risk. Optional section waste and vacuum, disposable blade holder.
Histology/Tissue Processing - BalanceMettler (PB303-S) semimicro balanceMass range of 0.01 mg- 120 g.
Histology/Tissue Processing - HistobathFisher Histobath 134Prevents development of microscopic ice crystals and sample distortion.
Histology/Tissue Processing - Microwave OvenAmana (RFS18MPS) Microwave OvenTissue microwave fixation.
Histology/Tissue Processing - Microwave OvenGE Microwave oven (JE1460BF001)Tissue microwave fixation.
Imaging System - CameraPolaroid camera Instant recording of gels.
Imaging System - Slide ScannerAperio ScanScope Slide Scanner CS2Generates full color, high resolution digital images (cells, tissues and tissue arrays). 5 slide capacity. Image analysis software available. Stored and catalogued in searchable image data base.
IncubatorFisher Scientific Dry Bath IncubatorPrecise temperature control for temperatures up to 130 C. Built in temperature sensing probe for improved temperature accuracy and control.
Microscope - Laser Capture Microdissection SystemArcturus XT Laser Capture Microdissection System Automated IR and UV laser capture. Microdissection and cutting of cells for RNA, DNA and protein isolation. One modular platform with laser capture and cutting. Optional live-cell modules and camera. Any slide type. Wide range of objectives available, 2x-100x dry and 100x oil immersion.
MicroscopeOlympus Fluorescent Microscope BX41Image Pro Imaging Software. Excitation available 330-385nm, 460-490nm, 510-550nm. Magnifications of 20,40, 100, 200 power. Both reflected light and sample fluorescence may be viewed through and recorded at the microscope.
MicroscopeOlympus BX41 General Use MicroscopeOptical system: UIS2. Built in transmitted Koehler illuminator, 6V/30W bulb. Stage height movement by roller guide, stroke per rotation: 36.8mm. Full stroke range: 25mm. FN20, tube inclination 30 degrees. Stage size: 188 x 134 mm.
MicrotomeLeica RM2255 MicrotomeThe microtome designed for fully motorized sectioning of both paraffin- and resin-embedded specimens, offers a broad application spectrum for the routine and research histology laboratory.
PCR Thermal CyclerBio-Rad C1000 Touch Thermal Cycler The C1000 Touch thermal cycler offers superior performance and a large color touch screen for easy programming. This fully modular platform is able to accommodate different throughput needs with easily interchangeable reaction modules that swap in seconds without tools. Each PCR module has a fully adjustable heated lid that supports a wide range of vessels and sealers, including low-profile and standard-height PCR plates.
OvenThermo Fisher Scientific Model 3511FS The temperature range, controlled by a bimetallic thermostat on the front control panel, is from ambient +5°C to 210°C.
Workstation - Robotic - BarcodingVentana Discovery System Automated staining module using bar code technology. Total automation in IHC staining of frozen/ paraffin embedded tissue, FISH and ISH using DNA, RNA or oligonucleotide probes on tissue or microarrays (gene expression).
SpectrophotometerEppendorf BioPhotometer 50 microliter volumes. Automatic calculation of dilution factors. Measures wave lengths: 230, 260, 280, 340, 405, 490, 550, 595, 650 nm. Spectral bandwidth: 5nm at 230-340nm, 7nm at 405-650nm. Photometric random error +/- 0.002A at 0A, +/- 0.005A at 1A.
Suspension Array SystemBeecher Manual Tissue Microarrayer Generates multiple specimen slides that can contain hundreds of individual tissues. Up to 100 tissue cores per paraffin block. Use for same histochemical and molecular detection techniques as with regular sections.
Oven - VacuumNapco Model 5831 vacuum ovenCapacity: 0.45 cu ft. Temp range: 35 C to 200 C. 30-in Hg vacuum capability. Vacuum bleed valves permit pulling of vacuums as high as 30 inches H. Full view observation window with latched door and built in safety to prevent thermal runaway.
WaterbathPolyScience refrigerated/heated (9106) circulating waterbathThese quality baths are ideal for calibration, electrophoresis, rotary evaporation, viscometry, or other applications requiring cooling or heating. Standard Digital Controller Bath features ±0.05°C temperature stability down to -20°C
PCR Thermal CyclerAgilent Mx3005P qPCR SystemAvailable for gene expression analysis, microarray data validation, SNP genotyping, pathogen detection, DNA methylation analysis, and chromatin immuno-precipitation studies.
SpectrophotometerThermo Scientific NanoDrop 2000Wide spectral range (190-840nm) for measuring a variety of samples types. Only requires 0.5 - 2 µL of your sample. Pre-configured methods for DNA, Protein A280, Microarray, Protein and Labels, Pierce 660, Bradford, BCA, and Lowry. No dilutions required, even for highly concentrated samples. Fast measurement time of less than 5 seconds, 10 -15 seconds from sample pipetting to wiping the pedestal clean.
Software - Image Analysis SoftwareMedia Cybernetics Image-Pro PremierAllows processing and analysis of a 2D and 3D (limited) images (brightfield/IHC, fluorescent, other) for qualitative and quantitative in both spatial and frequency domains
MicrotomeLeica HistoCore Autocut MicrotomeAutomated Rotary Microtome
Tissue ProcessorThermo Scientific Shandon ExcelsiorFollowing fixation, tissue samples are transferred to a tissue cassette and run through an automated cycle of dehydrating, clearing, and infiltrating.
Paraffin Embedding WorkstationThermo Scientific Shandon Histocentre 3 Embedding Center Following paraffin tissue processing, samples are embedded in paraffin to produce paraffin embedded tissue blocks.
Biospecimen Banking - FreezerBaxter Scientific Products Cryto-Fridge -80 CSpecimen Storage
Autostainer
Contact:
Leica DakoAn automated staining system that increases reproducibility of IHC (chromogenic or immunofluorescent) and multiplex staining.
Biospecimen Banking - RefrigeratorPHCbi FReagent Storage
Biospecimen Banking - RefrigeratorThermo Scientific 4 FReagent Storage
AutostainerAgilent Dako Autostainer Link 48The immunohistochemistry stainer that offers optimal staining results and greatly improve workload management.

Mouse Transgenic and Gene Targeting Facility

(last updated 2022-01-21 08:23:13)
»See Mouse Transgenic and Gene Targeting Facility website for more details

Contact: Jinping Luo, PhD

Location: Laboratories for Molecular Medicine  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Biological Safety CabinetNuAire Safety Cabinets Class 2 Type A/B3Transgenics and gene targeting safety cabinets (2 units)
CentrifugeThermo IEC Centra CL3R Refrigerated CentrifugeTransgenics and gene targeting refrigerated centrifuge
Electroporation SystemBio-Rad Gene Pulsar IITransgenics and gene targeting electroporation system
Biospecimen Banking - FreezerCustom BioGenic Systems Liquid Nitrogen (LN2) FreezerTransgenics and gene targeting liquid nitrogen freezer
Biospecimen Banking - FreezerThermo Fisher Scientific -80 CTransgenics and gene targeting -80 C freezer
Biospecimen Banking - Freezer Frigidaire -20 C FreezerTransgenics and gene targeting freezer
Transgenics and Gene Targeting - ES Cell Gene Targeting SystemServiceGene targeting services through transfection and microinjection of murine embryonic stem (ES) cells to produce germline knockout (KO) or knockin (KI) mice.
IncubatorNuAire CO2 water jacketed Incubators Transgenics and gene targeting incubators (3 units)
SpectrophotometerThermoFisher Scientific NanoDrop LiteMeasures nucleic acid and protein concentration
Cell Manipulator - Microinjection systemEppendorf FemtoJet Microinjection SystemTransgenics and gene targeting pronuclear injection system
MicromanipulatorEppendorf Transferman NK 2 MicromanipulatorsTransgenics and gene targeting micromanipulators (2 units)
MicroscopeNikon Eclipse TE200 Inverted MicroscopeTransgenics and gene targeting microinjection microscope
MicroscopeNikon Eclipse TS100 (cell culture scope)Transgenics and gene targeting cell culture scope
MicroscopeNikon SMZ1500 Zoom StereomicroscopesTransgenics and gene targeting dissecting microscopes (2 units)
MicroscopeNikon SMZ800 Zoom StereomicroscopesTransgenics and gene targeting surgical microscope
Transgenics and Gene Targeting - CRISPR/Cas9 Design and Reagent PreparationServiceService to provide consultation, design a CRISPR model, synthesize sgRNAs and prepare microinjection mix
Transgenics and Gene Targeting - CRISPR/Cas9 Donor Construction/PreparationServiceService to construct a donor DNA for a CRISPR model.Knock-In (KI, >80bp), Knock-Out (KO), Conditional Knock-Out (cKO - two steps), Point Mutation (PM)
Transgenics and Gene Targeting - Transgenesis by Random IntegrationsServiceService to provide custom services related to microinjection, ES cell culture, mouse surgery, or mouse reproduction. The core facility will provide services and/or training related to our capabilities that are not specifically covered by our service list. These services are available for an hourly fee. Examples include: production of MEFs (murine embryonic fibroblasts), polar body biopsy, reproductive surgery, blastomere injection, frozen embryo shipment, training
Transgenics and Gene Targeting - Mouse Line Recovery from CryopreservationServiceService to thaw and implant previously cryopreserved mouse embryos From frozen embryos or frozen sperm.
Transgenics and Gene Targeting - Cryopreserved Mouse Embryo StorageServiceService to store cryopreserved mouse embryos in liquid nitrogen (LN2)
Transgenics and Gene Targeting - Derivation of Mouse Embryonic Stem (ES) cell linesServiceService to produce embryonic stem (ES) cells from an existing mouse line key words: murine embryonic stem cells
Transgenics and Gene Targeting - Chimeric Mouse ProductionServiceService to produce chimeric mice for analysis through microinjection of murine embryonic stem (ES) cells into blastocyst stage embryos.
Transgenics and Gene Targeting - Mouse Colony ExpansionServiceService to use superovulation and surgical implantation to produce large cohorts of age matched mice for experimentation or to quickly expand a mouse colony
Transgenics and Gene Targeting - Mouse Embryo Cryopreservation ServiceService to cryopreserve valuable mouse lines for storage or shipment to other investigators. Heterozygous embryos or Homozygous embryos
Transgenics and Gene Targeting - Mouse In vitro Fertilization (IVF) ServiceService to perform in vitro fertilization of mouse embryos using fresh or frozen sperm.
Transgenics and Gene Targeting - Rederivation of Mouse LinesServiceService to rederive mouse lines obtained from a source other than a Brown University approved vendor. Rederived mouse lines may be housed in any campus mouse facility.
Transgenics and Gene Targeting - Embryo Microinjection/Electroporation ServiceService to perform pronuclear microinjection of 0.5 dpc mouse embryos to produce transgenic or CRISPR founders on an FVB/N or C57/BL6 background. Custom backgrounds also available.
C1000 Touch Thermal CyclerBio-RadTransgenics and gene targeting reagents preparation or PCR for genotyping
Micropipette puller, Model P-97Sutter Instrument co.Prepare microinjection holding or injection glass pipettes for transgenics and gene targeting
Centrifuges 5424, 5425 and 5425REppendorfTransgenics and gene targeting reagents preparation or genotyping use
Mastercycler gradientTransgenics and gene targeting reagents preparation or PCR for genotyping
Micro Forge MF-900Narishige International USAPrepare microinjection holding or injection glass pipettes for transgenics and gene targeting
Narishige Pneumatic MicroinjectorNarishige International USAIntracytoplasmic sperm injection
ECM 830 Electro Square PoratorBTX Harvard ApparatusTransgenics and gene targeting mouse embryo electroporation
Electroporation SystemThermoFisher Scientific Neon Transfection SystemNucleic acid and protein electroporation
Transgenics and Gene Targeting - CRISPR/Cas9 GenotypingServiceService to genotype founders and G1 progeny from a CRISPR project
Transgenics and Gene Targeting - CRISPR/Cas9 Germline TransmissionServiceService to subclone and sequence a PCR amplicon from founders of a CRISPR project
Transgenics and Gene Targeting - Germline TransmissionServiceService to breed chimera from mouse ES cell injection or founders from a CRISPR project with WT mice for germline transmission
Transgenics and Gene Targeting - Sperm CryopreservationServiceService to cryopreserve sperm from males provided by investigators
Biospecimen Banking - FreezerSP Scientific, Bio-cool IV40AEmbryo cryopreservation at a controlled slow rate
Microinjection systemPrime Tech, Piezo Drive PMM4GIntracytoplasmic sperm injection

Multiplex Facility

(last updated 2023-03-17 13:41:32)
»See Multiplex Facility website for more details

Contact: Suzanne de la Monte

Location: 55 Claverick Street  »See on the Map

Affiliated Centers: Liver Research Center, Center for International Health Research, Center for International Health Research, Liver Research Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Behavioral Phenotyping - Four Lane RotarodEmitter-Columbus Rotamex 5 ControllerUsed to assess motor coordination and balance
Behavioral Phenotyping - Morris Water MazeFabricated in house Opaque white pool with platform for behavioral swim test.
Biospecimen Banking - FreezerHHP Barcoding InstrumentBarcode samples for identification. File Pro software.
CentrifugeBeckman Coulter Allegra 64R Refrigerated CentrifugeFor use with 50 mL conical tubes.
CryostatLeica CryostatFrozen Tissue Sectioning. UVC disinfection and AgProtect minimizes contamination risk. Optional section waste and vacuum, disposable blade holder.
DisrupterSiegen Tissue LyserDisrupts multiple biological samples through high speed shaking in plastic tubes with steel, tungsten carbide, or glass beads. Up to 48 samples can be processed simultaneously.
Imaging SystemApplied Scientific Instrumentation MS-1000XY stage designed to provide a high resolution, and highly repeatable, means of controlling the X and Y position of a microscope stage
Imaging System - CameraOlympus U-CMAD3 cameraConnected to Olympus Inverted CKX31 Fluorescent Microscope. Digital Imaging of samples. 1.3, 3.0, 5.0 megapixel available. Vivid colors, 12-bit image capture, high-speed readout, external trigger output, USB 2.0 interface for universal connections.
Imaging System - CameraSony 3CCD Exwave HAD Digital CameraConnected to Olympus BX60. Digital Imaging of samples. 1.3, 3.0, 5.0 megapixel available. Vivid colors, 12-bit image capture, high-speed readout, external trigger output, USB 2.0 interface for universal connections.
Imaging System - CameraStereologer 2001/3" type DSP 3-CCD PAL color video camera with improved camera sensitivity (F8 at 2000 lx). Resolution of 800 TVL and a high S/N ratio of 61 dB.
Microplate ReaderMolecular Dynamics M5 SpectracountCross talk (96-well): 3X 10-5, sensitivity: <20 attomol ATP per well, <0.2 firely luciferase per well, spectral range: 380-630 nm.
Microplate ReaderPackard-Perkin Elmer TopcountAnalysis of cell proliferation, receptor binding assays, solid phase RIA/LIA, reporter gene assays, 51Cr release assays, HPLC fraction analysis, scintillation proximity assays, etc.
Microplate ReaderMolecular Devices UV Max Microplate Reader96-wellplate reader. Spectral range: 405-630 nm.
MicroscopeOlympus BX60High-resolution digital pictures using conventional manual filter cubes or more versatile automated filter wheels, and can superimpose multi-color pictures
MicroscopeOlympus Inverted CKX31 Fluorescent MicroscopeInverted microscope with the capability of a fluorescence illuminator for GFP; documentation of images with digital imaging and video monitoring. Use for petri dishes, culture flasks, and multi-well plates.
MicroscopeOlympus Inverted Fluorescent microscopeFN22. 9mm stroke, coaxial coarse and fine focusing knobs. Long working distance universal condenser.
PCR Thermal CyclerRoche Lightcycler 4810Exchangeable 96 or 384 multiwell plate format. Ideal for multiplexing and automated workflows. Provides various methods for gene detection, gene expression analysis, genetic variation analysis and array data validation.
Robotic Workstation - DNA ExtractionQUIAGEN Biorobot EZ1Fully automated purification of genomic DNA from human whole blood and viral nucleic acids from serum or plasma samples.
Robotic Workstation - PipettingEppendorf EpMotion 5070Automated pipetting. Four deck positions can hold tips, reagent reservoirs, single tubes, tube racks, micro-plates, or PCR plates with up to 384 wells. Suited for serial dilutions, reagent distribution, transfer from tubes to plates and normalization.
Robotic Workstation - PipettingTecan Genesis 200 RobotAutomated robot for pipetting tasks. Two arms- the LiHa (liquid handler) and the RoMa (robot manipulator). LiHa- conductivity-sensing 8-channel pipetting arm dispenses volumes of 5-1000 μL; RoMa- manipulating arm picks up and moves objects on the workstation.
SpectrophotometerThermo Scientific NanoDrop 2000Measures DNA, RNA, and protein concentrations, and purity (A260/A280 ratio). Conc. range= 2 ng/microliter-15,000 ng/microliter; Min Sample size = 0.5 microliter.
Suspension Array SystemLuminex MagpixReads magnetic bead-based immunoassays. Automated reading of 96-well plates (~60 min/plate). Multiplex analysis of up to 50 biomolecules in a single sample.
Suspension Array SystemBio-Rad BioPlex 100Automated reading of 96-well plates, up to 9,600 data points in about 35 min. Multiplex analysis of up to 100 biomolecules in a single sample via suspension array.
Suspension Array SystemBio-Rad Vacuum manifoldVacuum purification platform for single 96-well plates or individual luer-ended spin columns. Compatible with Bio-Plex 200 suspension array system.

Nanofabrication Central Facility (NCF)

(last updated 2022-03-16 14:54:22)
»See Nanofabrication Central Facility (NCF) website for more details

Contact: Michael Jibitsky

Location: Room 010, Engineering Research Center Building  »See on the Map

Affiliated Centers: Instrumentation for Molecular and Nanoscale Innovation (IMNI)

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Deposition System - Thin Film DepositionAngstrom - Multi-Target Sputtering SystemThis system accommodates four 3-inch sputtering sources and a variety of PVD processes (RF and DC). The temperature of the substrate can be increased up to 800˚C.
Chemical HoodWet chemistry workbenches equipped with fume hoods for lithographyThe Microelectronics Facility has a number of wet chemistry workbenches equipped with fume hoods for chemical processing (cleaning, wet etching, electroplating, anodization, etc) employed in the fabrication of semiconductor and nanomaterials devices. These hoods also house spinners for applying photoresist for lithography and other polymers.
Lithography - Mask AlignerKarl Suss MJB3 UV300 Mask Aligner for LithographyThe Karl Suss MJB3 UV300 3-inch mask aligner is designed for high-resolution photolithography, with a 350 W mercury lamp and Suss diffraction-reducing exposure optics. The primary exposure wavelengths of 365 or 403 nm lead to roughly 1 µm minimum feature size. For smaller feature sizes, electron-beam lithography is available in the Electron Microscope Facility.
Lithography - Maskless AlignerHeidleberg MLA 150 Maskless Aligner MLA150 Maskless Aligner is a high-speed, direct-write, optical lithography system to fabricate nano- and micro-patterned materials and surfaces at low-cost and over large areas. The instrument comprises two laser illumination modules, optical systems to steer the laser beams and control exposure, integrated cameras for high-accuracy alignment to pre-existing structures, automated translation stage, real-time pneumatic autofocus, and a class 10 climate controlled chamber to achieve photo-lithographically defined structures with feature size ≤1μm.
Lithography - Flexible Mylar-MaskNewport-Oriel flexible Mylar-Mask Lithography SystemNewport-Oriel flexible Mylar-Mask Lithography System is designed for printing from flexible Mylar masks onto substrates as large as 4” x 4” square or 5” diameter. It is capable of printing 5-micron features with placement and alignment to approximately 2 microns with appropriate alignment marks.
Evaporator - Thin Film DepositionElectron Beam EvaporatorThis system deposits thin films of inorganic materials, usually metals, from a four-pocket electron-beam source inside a high vacuum (cryopumped) chamber. Deposition rates of up to 0.1 micron/minute are possible for some materials. This system can easily accomodate relatively large, 3-D objects and has substrate heating to 300 C for flat substrates. Restrictions on what materials may be evaporated are somewhat less stringent than for our other evaporators.
Lithography - ImprinterNIL Technology Nano ImprinterThe Nano Imprinter system offers thermal and UV nanoimprint and imprinting in vacuum if needed. The system transfers the patterns, usually nanohole or nanopillar arrays, from a silicon stamp to a nanoimprint-polymer-coated substrate by applying heat and pressure.
Evaporator - Thin Film DepositionAngstrom Organic EvaporatorThe Angstrom Resitive-heated Evaporator is a thermal evaporator coupled with a nitrogen glove box. It is for depositing thin organic and inorganic films when either the deposition material or the substrate is adversely affected by moisture or oxygen. Samples and/or evaporants are loaded from a nitrogen glove box maintained at under 10 ppm of oxygen and under 1 ppm of water vapor.
Deposition System - Thin Film DepositionCambridge NanoTech Atomic Layer Deposition SystemThe Cambridge NanoTech Fiji F200 series Atomic Layer Deposition System is a modular medium to high-vacuum ALD system that accommodates a wide range of deposition modes. This tool is currently configured with precursors for metallic and oxide layers of Hafnium, Aluminum, and Tungsten.
Deposition System - Thin Film DepositionPlasmatherm Model 790, Fluorine Chemistry Reactive Ion Etching Plasma Enhanced Chemical Vapor Deposition System (RIE PECVD)The PlasmaTherm Model 790 RIE-PECVD system has a computer-controlled single-wafer turbopumped chamber that provides reactive ion etching (RIE) and plasma-enhanced chemical vapor deposition (PECVD) capabilities. RIE is accomplished using fluorine-chemistry gases (CF4, CBrF3, CHF3, SF6, etc.) with up to 500 W RF power. PECVD capability provides low-temperature (up to 350 C) SiO2 and Si3N4 deposition from silane chemistry.
Profilometer - CharacterizationDekTak3 ProfilometerThe DekTak3 is a computer-controlled surface profile measuring system, which accurately measures step heights from below 50 A to over 50 µm by moving a diamond-tipped stylus over the surface. Equipped with video camera and surface profile analysis software.
Analytical ProberKarl Suss 200mm Precision Manual Analytical Prober200mm Precision Manual Analytical Prober. The PM8 provides the stability and resolution required for precise probe positioning. Manual submicron semiconductor failure analysis and in-process testing probe station. Submicron precision and stability with a fine-glide chuck stage and 8 in. x 8 in. X-Y movement. As fast as a motorized stage but with the simplicity and resolution of a manual system. Vacuum Chuck: 8 in. dia. Mitutoyo high magnification microscope with two long working distance objectives. Microscope lifts for easier access to the probes and device under test. The station is fitted with six Wentworth micromanipulators having tungsten needle probes with 3 micron tips.
Deposition System - Thin Film DepositionLesker Lab 18 thin film deposition systemThe Lab-18 thin film deposition system is a combined electron-beam evaporator and RF sputtering Physical Vapor Deposition (PVD) system that makes high quality, research-grade metallic, semiconducting, and dielectric thin films. The Lab 18 includes a four-pocket electron beam evaporator as well as two 2” magnetron sputter sources. Two mass flow regulated gas lines provide for control of chamber pressure and gas composition for reactive sputtering.
Plasma Etching System Inductively Coupled Plasma RIE SystemThe SPTS LPX is an inductively-coupled plasma (ICP) reactive-ion etcher (RIE). It can etch high-aspect ratio structures in a wide range of materials, including silicon, silicon dioxide, and silicon nitride. This system is configured with a range of gases for reactive- and physical-ion etching, including SF6, C4F8, CF4, O2, and Ar. The LPX-ICP system is equipped with a single-wafer load-lock transfer arm for 100mm wafers; smaller wafers and small pieces may be processed on the system using a carrier wafer.
Characterization - Thin Film DepositionJA Woollam, M-2000 Ellipsometer Variable Angle Research GradeThe JA Woollam, M-2000 Variable Angle Research Grade ellipsometer measures angle- and wavelength-dependent reflectivity and transmissivity data over a wide spectral range (from ultraviolet to near-infrared) that is analyzed to directly to determine optical properties of single- and multi-layer films (e.g., their thickness and complex wavelength-dependent refractive index), which provide insight into their underlying chemical, electronic, and mechanical properties.
FurnaceWet and Dry OxididationQuartz tube furnace for thermal oxide growth on silicon by a chemical reaction between the silicon and either dry oxygen or water vapor at atmospheric pressure. The typical temperature range for the oxidation of silicon for wafer fabrication 750˚C to 1100˚C. The tubes accommodate multiple 2 inch wafers.

NanoTools Facility

(last updated 2022-03-18 10:40:44)
»See NanoTools Facility website for more details

Contact: Hector Garces

Location: Institute for Molecular & Nanoscale Innovation (IMNI), Room 104, Prince Lab  »See on the Map

Affiliated Centers: Instrumentation for Molecular and Nanoscale Innovation (IMNI)

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
X-Ray Diffraction System, 2 Dimensional Bruker, D8, XPSThis Bruker D8 Discover X-ray Diffraction System can be configured with a point and line source x-rays. A Vantec 500 2D area detector or a LinxEye (0D, 1D)detector can be used for the analysis. The system is suitable for texture, stress, and micro-x-ray diffraction as well as for orientation and epitaxy studies. The instrument has in-situ capabilities for studies at low/high temperature and under vacuum to study properties as a function of time, temperature, gas environment or vacuum. A capillary spinner stage is also available for investigations of air sensible materials with the sample prepared in a capillary glass.
X-Ray Diffration System, High-ResolutionBruker, D8, XPSThis Bruker D8 Discover X-ray Diffraction System includes a line source configuration system with a LinxEye (0D, 1D) detector and a Scintillator detector. The system is suitable to determine thickness, crystallographic structure and strain in epitaxially thin films as well as high resolution analysis of bulk materials. X-ray reflectometry (XRR), high resolution XRD, grazing incidence diffraction (GI-XRD), in-plane GID (IGID) and reciprocal space mapping (RSM) are some techniques that can be performed with this configuration. High resolution is obtained using parallel beam optics: Goebel mirror, monochromators, soller slits and analyzer crystals. 
Microscope - Atomic ForceAsylum, MFP-3D, AFMThe Asylum MFP-3D Origin atomic force microscope (AFM) is a multi-mode instrument. It is equipped with a closed loop operation in all three axes with high precision, resolution and low noise operation. The closed loop Z scanner eliminates hysteresis. The AFM provides a 90 µm X and Y range (< 0.5nm noise) and 15 µm Z range (Z sensor, 0.25 nm noise) and detector noise <15 pm. It also includes Inverted optical lever design that eliminates interference artifacts and a low-coherence infrared (860 nm) super-luminescent diode (SLD) light source (class 1M). Applications include dual AC resonance tracking (DART), electric force microscopy (EFM), force mapping mode, lateral force microscopy (LFM), magnetic force microscopy (MFM), kelvin probe force microscopy (KPFM), piezo-response force microscopy (PFM), and conductive AFM (C-AFM) with ORCA.
Microscope - Confocal RamanWitec, Alpha 300 M+, CRMThe Witec Alpha 300 Confocal Raman Microscope is equipt with different scan modes for local Raman spectra, mapping distribution of phases within a sample and with 3D image generation and depth profile of samples. The depth profiling and 3D imaging capabilities of the Alpha 300 provide the ability to analyze the interior of transparent samples without microtome sectioning or freeze etching. Multi-wavelength coupler for selection of 532 nm or 633 nm wavelength laser sources and a Ray Shield coupler for measurements of Raman spectra at low wave numbers. Fast Raman imaging with integration time in the milliseconds order per spectrum. A heating stage for in-situ measurements in the temperature range 25°C to 1400°C with a thermal stability of ± 0.3°C.
Spectrometer - Electron Paramagnetic Resonance (EPR)Bruker, EMX+, EPRThe Bruker EMX Electron Paramagnetic Resonance (EPR) Spectrometer is equipt for the Technique for the direct detection of paramagnetic species. The EMX EPR has a digital resolution of 24 bit center field, a field sweep up to 256,000 points, high-sensitivity resonator with irradiation window, dual channel, simultaneous detection of 1st and 2nd harmonic, and sensitivity S/N up to 2000:1. The system has a helium temperature control system for low temperature measurements in the temperature range 3.8 K (~-269 °C) to 300 K (~27°C). Applications span a wide range of areas an include kinetics of radical reactions, oxidation and reduction process, polymerization reactions, degradation of compounds by light, organometallic compounds and catalysis, free radicals, and antioxidants and radical scavengers.

Neuromodulation and Neuroimaging Core (NNC)

(last updated 2022-10-17 15:22:19)
»See Neuromodulation and Neuroimaging Core (NNC) website for more details

Contact: Kristin Fortin-Ashburne

Location: Butler Hospital  »See on the Map

Affiliated Centers: Carney Institute for Brain Science, IDeA COBRE Center for Neuromodulation (CCN) at Butler Hospital

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Neuromodulation and Neuroimaging Research Services
Contact: Kristin Fortin-Ashburne
NNC Core
The Neuromodulation and Neuroimaging Core (NNC) facilitates the research goals of COBRE Project Leaders and pilot grant investigators and benefits the broader neuromodulation research community by providing expert support, training, assistance, and advice to its constituents in the practical aspects of implementation, data collection, and project management related to neuroimaging and neurostimulation methods.The NNC addresses a critical need, namely, to provide Project Leaders with unique resources, skills, and support for using the best methods and practices surrounding neuroimaging and neuromodulation in clinical neuropsychiatric populations. The NNC provides key services for research projects and creates an enduring resource that offers neuromodulation researchers a series of educational seminars, hands-on workshops, and customized training opportunities, high-level consultative and medical input, and use of a specialty research facility at Butler Hospital with lab space, equipment, and medical support.

NMR Facility

(last updated 2022-03-18 09:29:07)
»See NMR Facility website for more details

Contact: Russell Hopson, PhD

Location: MacMillan Hall  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Nuclear Magnetic Resonance (NMR) SpectrometerBruker 600 Avance III HD Ascendz-BBFO probe for all nuclei (most sensitive for all nuclei)
Nuclear Magnetic Resonance (NMR) SpectrometerBruker 400 Avance III Ultra-Shield z-BBFO probe (2nd most sensitive for 1H and broadband nuclei) - (HR-MAS probe)
Nuclear Magnetic Resonance (NMR) SpectrometerBruker 400 Avance Ultra-Shield z-BBO (3rd best sensitivity for broadband nuclei)

Organic Synthesis Shared Resources (Legorreta Cancer Center at Brown University)

(last updated 2023-06-09 15:28:24)
»See Organic Synthesis Shared Resources (Legorreta Cancer Center at Brown University) website for more details

Contact: Xiaobing Tian, PhD

Affiliated Centers: Legorreta Cancer Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Training and Technical AssistanceServiceAssist investigators with experimental plans for drug synthesis for lead optimization. Facilitate organic synthesis efforts through interactions with the Department of Chemistry, Industry or other collaborations. Provide support for grant submissions.

Organoids Shared Resources (Legorreta Cancer Center at Brown University)

(last updated 2023-06-09 15:29:01)
»See Organoids Shared Resources (Legorreta Cancer Center at Brown University) website for more details

Contact: Lanlan Zhou, MD, PhD

Affiliated Centers: Legorreta Cancer Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Training and Technical AssistanceServiceAdvise and assist investigators with the production of organoids to facilitate cancer biology, drug efficacy and toxicity evaluation of therapeutics towards tumor versus normal organoids that express different cancer gene mutants. Provide support for the growth and maintenance of organoid and spheroid cultures including passaging. Maintain a collection of established organoids that can be provided to investigators for research. Develop gene knockout and overexpression matched patient-derived organoids. Assist investigators with planning of drug screens working with the drug discovery capability. Provide support for grant submissions.

PC - Albertus Magnus Hall Labs

(last updated 2023-03-20 14:28:08)

Contact: Patrick Ewanchuk

Location: Albertus Magnus Hall  »See on the Map

Affiliated Centers: Rhode Island Consortium for Coastal Ecology Assessment Innovation and Modeling (RI C-AIM), IDeA Rhode Island IDeA Network of Biomedical Research Excellence (RI-INBRE) at University of Rhode Island

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Environmental Chamber
Contact: Maia Bailey
Percival Scientific 1 unit
Environmental Chamber
Contact: Maia Bailey
Percival Scientific, AR-22L Growth ChamberFor Arabidopsis
Imaging System - Camera
Contact: Pat Ewanchuk
Fastec HiSpec1, Low-Light High-Speed CameraInnovative Low-Light High-Speed Camera. Monochrome with 2GB Memory, C-Mount, includes ImageBLITZ Auto Trigger, Burst Trigger Mode, Multi- Sequence Record Mode (1280 x 1024 at 506fps) 2 Units
Microscope - Electron
Contact: Joe DeGiorgis
Philips EM-300 Transmission Electron Microscope (TEM)Transmission electron microscopy
Sample Preparation - Laboratory - Prep Lab
Contact: Joe DeGiorgis
Electron Microscopy Prep LabLaboratory space for preparing samples for electron microscopy
Microscope - Electron
Contact: Joe DeGiorgis
Amray-1000 Scanning Electron Microscope (SEM)Scanning Electron Microscope equipped with EDEX for elemental analysis and a digital imaging system, a Zeiss Axiophot equipped for bright field, dark field, DIC and fluorescence microscopy with a digital imaging system
Microtome
Contact: Joe DeGiorgis
Porter-Blum MT-2B UltramicrotomePorter-Blum MT-2B UltraMicrotomes, 2 Units
Aquatic System
Contact: Pat Ewanchuk
Aquatic Habitats Glass Tank System and Life Support Controller Glass tank system and life support controller with low water level protection (18-10 gallon tanks)
Imaging System - Visualization- Camera lucida
Contact: James Waters
Leica Drawing tubeDrawing tube, for MZ and M-series, the object and the drawing surface are visible at the same time, suitable for drawing for left and right handed persons, work is possible in the daylight. Documents and scales can be mirrored-in and photographed along with the object.
Analyzer - Respiratory physiology
Contact: James Waters
LI-COR Biosciences - Li-7000 CO2/H2OThe LI-7000 is a high performance, dual cell, differential gas analyzer. It uses a dichroic beam splitter and two separate detectors to measure infrared absorption by CO2 and H2O in the same gas stream. The LI-7000 is ideally suited for applications that demand high speed, high precision measurements in absolute and/or differential modes, including plant and insect gas exchange using chamber-based methods, atmospheric-surface flux eddy covariance and Bowen ratio techniques, vertical profiling, and general atmospheric monitoring.

PC - Hickey Hall Labs

(last updated 2023-03-20 14:29:02)

Contact: Patrick Ewanchuk

Location: Hickey Hall  »See on the Map

Affiliated Centers: Rhode Island Consortium for Coastal Ecology Assessment Innovation and Modeling (RI C-AIM), IDeA Rhode Island IDeA Network of Biomedical Research Excellence (RI-INBRE) at University of Rhode Island

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
DNA Sequencer
Contact: Elisabeth Arevalo
ABI Prism 3100 Genetic AnalyzerUsed for DNA sequencing and fragment analysis. The ABI PRISM 3100 Genetic Analyzer is an automated capillary electrophoresis system that can separate, detect, and analyze up to 16 capillaries of fluorescently labeled DNA fragments in one run.
PCR Thermal Cycler
Contact: Charles Toth
Stratagene Mx3000p Real-time PCR Thermal CyclerThis instrument is available for gene expression analysis, microarray data validation, SNP genotyping, pathogen detection, DNA methylation analysis, and chromatin immuno-precipitation studies. Agilent's qPCR software, MxPro, provides users with an intuitive interface, quick experiment design, powerful data analysis and easy report generation.
Fluorescence Activated Cell Sorter (FACS)
Contact: Charles Toth
Flow Cytometer- Accuri C6The BD Accuri C6 is a personal flow cytometer that is easy to use, simple to maintain, and affordable.
Cold Room
Contact: Charles Toth
Walk-In Cold Room
Analyzer - Cell Metabolism
Contact: Marla Tipping
Seahorse Biosciencies, XFe Extracellular Flux Analyzers, XFe96Platform for metabolic assays that simultaneously measures the two major energy producing pathways of the cell - mitochondrial respiration and glycolysis - in a microplate, in real-time.
Laboratory - Tissue Culture
Contact: Charles Toth
Tissue Culture LaboratorySpace and instrumentation for tissue culture preparation
Imaging System - Gel Imager
Contact: Yinsheng Wan
LI-COR Odyssey IR (Infrared) Imaging SystemInstrumentation for quantitating western blots.
Fluorescence Activated Cell Sorter (FACS)
Contact: Nicanor Austriaco
Cellometer Vision Image CytometryThe Vision CBA System combines the simplicity of image cytometry with the power of flow analysis software to offer user-friendly cell-based assays
Spectrophotometer
Contact: Charles Toth
Thermo Scientific NanoDropUV/VIS

PC - Sowa Hall Labs

(last updated 2023-03-20 14:29:52)

Contact: Patrick Ewanchuk

Location: Sowa Hal  »See on the Map

Affiliated Centers: Rhode Island Consortium for Coastal Ecology Assessment Innovation and Modeling (RI C-AIM), IDeA Rhode Island IDeA Network of Biomedical Research Excellence (RI-INBRE) at University of Rhode Island

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Microscope
Contact: Joe DeGiorgis
Zeiss LMS 700 Flexible Confocal Microscope Performs fluorescence measurements, creates optical sections of samples and combines them into 3D image stacks.

Pharmaceutical Development Institute

(last updated 2022-03-18 12:42:04)
»See Pharmaceutical Development Institute website for more details

Contact: Catherine Curtin-Miller

Location: URI, Avedisian Hall  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
current Good Manufacturing Practice (cGMP) FacilityServiceRapid expansion in the markets for biologics and small molecule pharmaceutical products has created a critical demand for skilled professionals (from equipment operators to advanced technical and quality assurance personnel) and additional infrastructure to support drug development and manufacturing.  The current Good Manufacturing Practice (cGMP) Facility at the University of Rhode Island (URI) offers a state-of-the-art training, development and manufacturing facility for GMP production of solid oral dosage forms.  
GMP manufacturingClinical Research Service, GMP manufacturingAssisting academic, government and industry partners with the manufacture of solid dose forms for veterinary and human use
GMP analytical testingClinical Research Service, GMP analyticalProviding pharmaceutical testing services including turn-key stability studies
Training CenterClinical Research Service, GMP educationProviding GMP industrial experience in drug manufacturing and analytical testing for students in various related undergraduate, graduate and adult education programs, as well as industry-specific training in collaboration with pharmaceutical and biotechnology firms.

Plant Environmental Center

(last updated 2022-03-18 09:56:35)
»See Plant Environmental Center website for more details

Contact: Nicholas Vasques

Location: Building for Environmental Research and Teaching  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Greenhouse
Contact: Nicholas Vasques
Plant environmental center with seven separate, computer controlled rooms where conditions like lighting, temperature, and humidity can be fine tuned; an additional 17 controlled plant growth environments provided by growth chambers (15) and walk-in growth rooms (2)A plant environmental center with a suite of supporting facilities, including a classroom, a headhouse for potting and other prep work, and growth chambers for plants.

Program for Environmental influences on Child Health Outcomes (ECHO)

(last updated 2023-03-16 14:34:11)
»See Program for Environmental influences on Child Health Outcomes (ECHO) website for more details

Affiliated Centers: ECHO-NOVI: Environmental Influences on Child Health Outcomes

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Program for Environmental influences on Child Health Outcomes (ECHO)Clinical Research Resources, Environmental Influences on Child HealthThe ECHO program investigates how exposure to a range of environmental factors in early development — from conception through early childhood — influences the health of children and adolescents.

Proteomics Core - Rhode Island Hospital

(last updated 2022-03-18 11:00:32)
»See Proteomics Core - Rhode Island Hospital website for more details

Contact: Paul Bertone, PhD

Location: The Coro West Building  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
High Performance Liquid Chromatography (HPLC)Agilent 1290 Infinity IIModular UHPLC system with automated multisampler and quaternary pump for analyte separations up to 600 bar.
Bioinformatics Analysis - MASCOTSoftware: Matrix Science MASCOT Search EngineSoftware for MS data analysis through statistical evaluation of matches between observed and projected peptide fragments.
Bioinformatics Analysis - ProteoIQSoftware: NuSep ProteoIQ Mass Spec Data AnalysisSoftware for post-analysis of MASCOT results. Protein and peptide probabilities generated and protein relative quantitation is performed by spectral counting. Normalized and with standard deviations.
Imaging System - Gel Imager Bio-Rad Molecular Imager VersaDocQuantitative digital imaging system for single or multi-color images. Includes multiplexed samples (1-D or 2-D gels), chemiluminescent and chemifluorescent blots, and microplates.
High Performance Liquid Chromatography (HPLC)Thermo Scientific nLC 1200High-performance LC for nanoflow resolution of complex analyte mixtures at up to 1200 bar.
Liquid Chromatography - Mass Spectrometer (LC - MS)Thermo Scientific Q Exactive Plus Mass Spectrometer LC-MS/MS system combines high-performance quadrupole with high resolution, accurate-mass (HR/AM) Orbitrap for total proteome characterization. Max resolving power= 140,000; max scan speed= 12Hz, Intra-scan dynamic range > 5000:, Quadrupole mass filter.
SpectrophotometerThermo Scientific NanoDrop 2000Measures DNA, RNA, and protein concentrations, and purity (A260/A280 ratio). Conc. range= 2 ng/microliter-15,000 ng/microliter; Min Sample size = 0.5 microliter.
Technical Assistance - Mass SpectrometryServiceService to provide Imaging Mass Spectrometry Data Analysis.
Technical Assistance - Protein Determination ServiceService to provide Protein Determination (BCA assay).
Technical Assistance - Protein Extraction ServiceService to provide ReadyPrep Protein Extraction Kit (Total Protein and Sequential Extraction).
Technical Assistance - Protein In-Gel DigestionServiceService to provide In-gel digestion LC/MS analysis and protein database search.
Technical Assistance - Protein In-Solution DigestionServiceService to provide In-solution digestion LC/MS analysis and protein database search.
Technical Assistance - Protein QuantificationServiceService to provide Data interpretation and protein quantification.
Technical Assistance - Protein Sample Clean-up ServiceService to provide ReadyPrep 2D Cleanup Kit.
Mass SpectrometerThermo Scientific TSQ QuantivaTriple-quadrupole MS for identification and absolute quantification of biomarkers, target proteins/peptides with known post-translational modifications in selected mass ranges.
Microplate ReaderGloMax Discover - Multimode Detection SystemMulti-mode detection instrument offering flexible use of filters and includes: high-performance, luminescence, fluorescence, UV-Visible absorbance, BRET and FRET, two-color filtered luminescence and kinetic measurement capabilities
Cell CounterThermo Scientific Countess II Automated Cell CounterAutomated image analysis of cell suspensions providing rapid measurement of total cell counts, viability and average cell size.

Proteomics Facility - Brown

(last updated 2023-03-16 14:36:46)
»See Proteomics Facility - Brown website for more details

Contact: Nicholas DaSilva, PhD

Location: 3rd Floor, Laboratories for Molecular Medicine  »See on the Map

Affiliated Centers: Rhode Island Consortium for Coastal Ecology Assessment Innovation and Modeling (RI C-AIM)

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Analyzer - CalorimeterMicrocal Isothermal Titration 200 (ITC)Characterization of molecular interactions of small molecules, proteins, antibodies, nucleic acids, lipids and other biomolecules.
Analyzer - CalorimeterMicrocal VP Differential Scanning (DSC)Measurement of heat changes that occur in biomolecules during controlled increase or decrease in temperature.
Fluorometer - SpectrofluorometerHoriba Jobin Yvon FluoroMax-4Fluorescence detection. A heated cell allows temperature studies.
SpectrometerJASCO J-815 Circular Dichroism (CD) SpectrometerProtein folding studies, Protein conformational studies, DNA/RNA interactions, Enzyme kinetics, Purity testing of optically active substances, quantitative analysis of pharmaceuticals, natural products chemistry, biochemistry and macromolecules, rapid scanning (time resolved) experiments. Peltier device for temperature studies.
SpectrophotometerThermo Scientific NanoDrop 8000 A full spectral microvolume (microliter) UV-Vis analysis spectrophotometer for measuring DNA, RNA, and protein of 8 samples simultaneously.
Technical AssistanceServiceService to provide Proteomics Technal Assistance
Mass SpectrometerThermo Scientific Q Exactive Plus Hybrid Quadrupole-Orbitrap Mass SpectrometerQ Exactive™ Hybrid Quadrupole-Orbitrap Mass Spectrometer is a bench-top ESI LC-MS/MS system that combines quadrupole precursor ion selection with high-resolution, accurate-mass (HRAM) Orbitrap detection.

Rhode Island Consortium for Nanoscience and Nanotechnology

(last updated 2023-05-08 13:18:21)
»See Rhode Island Consortium for Nanoscience and Nanotechnology website for more details

Contact: Matthew Cabral, PhD

Location: Fascitelli Center for Advanced Engineering  »See on the Map

Affiliated Centers: Rhode Island Consortium for Coastal Ecology Assessment Innovation and Modeling (RI C-AIM)

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Sample Preparation - Sputter Coater System
Contact: Irene Andreu
Cressington 7002-8 sputter coater with film thickness monitorCoat non-conducting samples with gold for use on the SEM, rotating/tilting stage for coating of large specimens.
X-Ray Diffraction System
Contact: Irene Andreu
Request a Service
Rigaku Ultima IV multipurpose X-ray diffraction (XRD) systemmicro-crystalline diffraction, thin-film diffraction, small angle scattering, and in-plane scattering.
Microscope - Field Emission-Scanning Electron Microscope (FE-SEM)
Contact: Irene Andreu
SIGMA VP FE-SEM
Request a Service
Zeiss Gemini Sigma VP Field Emission-Scanning Electron Microscope (FE-SEM)Field emission scanning electron microscope Zeiss Gemini Sigma VP, with cryoSEM (Gatan), energy dispersive X-ray spectroscopy (Oxford Instruments), variable pressure mode, backscattering detector, in lens detector and secondary electron detector
Microscope - High Content Screening SystemPerkin Elmer - Opera PhenixHigh Content Screening System: Automated confocal fluorescence microscope designed for high-throughput 3D imaging of fluorescent samples in microplates, live-cell imaging, drug screening, spheroid imaging
Sample preparation - Plunge freezer
Contact: Irene Andreu
Vitrobot Mark IV
FEI Vitrobot Mark 2 Plunge Freezer for cryoTEMAutomatic plunge freezer for cryoTEM sample preparation
Microscope - Confocal Raman Spectroscopy
Contact: Irene Andreu
WITec alpha 300RConfocal imaging and chemical analysis by Raman spectroscopy up to 100x magnification, 3D chemical imaging, large area imaging, principal component analysis of chemical composition, upright and inverted mode, automated XY stage, 785 and 532 nm excitation lasers
Microscope - Fourier Transform Infrared SpectroscopyShimadzu AIM-9000 with Shimadzu IRTracer100FTIR microscope and spectrometer, ATR, liquid and gas cell.
Sample Preparation - Automated pipettorOpentrons OT-2Automated sample preparation platform for staining well plates
Microscope - X-ray
Contact: Irene Andreu
Zeiss Xradia Versa 610 with in situ tensile, compression and temperature stageX-ray microscopy and tomography of samples up to 10 cm in diameter with resolution up to 500 nm
Spectrometer - Energy Dispersive X-Ray Fluorescence
Contact: Irene Andreu
Shimadzu EDX-8100Energy dispersive X-ray fluorescence of powders, solids and liquids. Ambient pressure, vacuum and He atmosphere
Microscope - Scanning Transmission Electron
Contact: Irene Andreu
JEOL F200 Scanning transmission electron microscope with cryogenic capabilities, direct electron camera (Gatan K3), Energy dispersive X-ray spectroscopy (JEOL), electron energy loss spectroscopy (Gatan). Sub nanometer resolution, 80 and 200 kV operation, TEM, STEM and diffraction
Microscope - Atomic Force
Contact: Irene Andreu
Shimadzu SPM-9700Scanning probe microscope for atomic force microscopy, magnetic force microscopy, liquid cell analysis, Kelvin force microscopy, I/V curves, nanomechanical measurements

Rhode Island INBRE Centralized Research Core Facility (CRCF)

(last updated 2022-01-21 08:34:44)
»See Rhode Island INBRE Centralized Research Core Facility (CRCF) website for more details

Contact: Dr. Ang Cai

Location: Avedisian Hall  »See on the Map

Affiliated Centers: IDeA Rhode Island IDeA Network of Biomedical Research Excellence (RI-INBRE) at University of Rhode Island

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Nuclear Magnetic Resonance (NMR) SpectrometerBruker Avance III 300 with BBO probeOptimized for small molecule NMR
Analyzer - Protein QualityTycho NT.6The Tycho NT.6 verifies protein quality by looking at the structural integrity (or foldedness) of a protein. Changes in the intrinsic fluorescence of the sample are measured as a thermal ramp is applied. Changes in the fluorescence signal indicate transitions in the folding state of the protein. The Tycho can be used to study the stability of protein samples in different buffers or at different pH values. The measurement is completed in three minutes and uses a capillary tube to hold the sample.
Characterization - Surface Plasmon ResonanceBiacore T200 SPRThe Biacore T200 is a surface plasmon resonance instrument which can be used to characterize molecular interactions between biomolecules ranging in size from ions to viruses. The Biacore software provides a range of tools for kinetic analyses. These analyses can be performed using a multicycle approach (many samples against one ligand or when different ligands are immobilized), or alternatively, using fast, single cycle kinetics.
Analyzer - Live CellRoche xCELLigence Real-Time Cell Analysis SystemLabel free live cell analyzer
Biological Safety CabinetNuAire, Laminar Flow HoodCell culture facility
Cell CounterNexcellom Cellometer Vision Cell CounterAutomated cell counter
CentrifugeBeckman Avante High Speed CentrifugeHigh speed centrifuge
CentrifugeThermo MultiFuge Centrifuge table-topCentrifuge
Centrifuge - UltraBeckman Coulter Optima Beckman Optima L-100 XP ultracentrifugeUltra centrifuge
Centrifuge - UltraSorvall Micro Ultra CentrifugeUltra centrifuge
Fluorescence Activated Cell Sorter (FACS)Becton Dickinson (BD) Biosciences FACS Verse Flow cytometerFluorescence-activated cell sorting
Electrophoresis System - Gel ElectrophoresisBio-Rad 2D Gel SystemTwo Dimensional (2D) Gel Electrophoresis
Liquid ChromatographyGE AKTA Fast Protein Liquid Chromatograph (FPLC)FPLC
ChromatographyTeledyne-ISCO CombiFlash SystemFlash Chromatography
Imaging System - Gel Imager LI-COR Odyssey IR (Infrared) Imaging SystemIR gel imager
Liquid Chromatography - Mass Spectrometer (LC - MS) AB SCIEX TripleTOF 4600 and Shimadzu Prominence UFLC sytemESI-TOF MS
Mass SpectrometerShimadzu Axima MALDI-TOF MS/MSMALDI MS
Mass SpectrometerThermo iCAPQ-a ICP-MSElemental Analyzer
Microplate ReaderMolecular Devices SpectraMax M2 Fluorescence/UV/VIS
Microplate Reader - LuminometerPromega GlowMax SystemChemiluminescence
MicroscopeNikon Eclipse E600 Upright MicroscopeMicroscope
MicroscopeNikon Eclipse Ti2 inverted confocal microscopeConfocal Microscope
PCR Thermal CyclerApplied Biosystems/Life Technologies ABI Vii7- qPCRReal Time-PCR
PCR Thermal CyclerEppendorf Mastercycler PCRPCR
SpectropolarimeterJasco J-1100 Circular Dichroism (CD) SpectropolarimeterCD
SpectrometerThermo Nicolet 380 Fourier Transformed Infrared Spectrometer (FT-IR)FT-IR
ChromatographyMetrohm Ion Chromatography 940 VarioIon Chromatography
SpectrophotometerThermo Scientific NanoDropUV/VIS
Water Purification System - Deionized (DI)Millipore Milli-Q Water SystemDI Water System
Western Blotting System Bio-Rad Turbo Trans Blot system Western Blotting
Synthesizer, DNA/RNAMerMade-4 Oligonucleotide synthesizerDNA/RNA Synthesizer
High Performance Liquid Chromatography (HPLC)Shimadzu Nexera-i HPLC systemHigh Performance Liquid Chromatography
MicroscopeEVOS FL Auto Cell Imaging SystemCell-based imaging applications—including live-cell imaging, image tiling, and Z-stacking
SpectrometerJasco Digital Polarimeter P2000Polarimeter
Imager - BiomolecularAzure Sapphire Biomolecular Imager The Azure Sapphire Biomolecular Imager is a laser scanning system has four lasers (488, 520, 658 and 784 nm) giving a wide range of excitation. The instrument supports long and short wavelength Near IR fluorescence, red/green/blue imaging, and chemiluminescent imaging. Multiple detectors are used depending on the excitation wavelength and application for maximum sensitivity. It can accommodate gels up to 25cm by 25 cm.
IncubatorHeraeus Heracell Double Stacked IncubatorThe Heraeus Heracell Double Stacked Incubator has Copper Chambers, which protects samples while optimizing cell growth with fast recovery characteristics.
Nuclear Magnetic Resonance (NMR) SpectrometerVarian 500 MHz NMR spectrometerOptimized for small molecule NMR
Mass SpectrometerABSciex Qtrap 4500 Triple Quadrapole LC/MSHas Shimadzu HPLC system attached
Microplate ReaderMolecular Devices ID3 Microplate ReaderUv/vis, Chemilumenesence, fluorescence
SpectrophotometerGenesys 50 UV/VISUV/Vis
Imager and Microplate ReaderBioTek Cytation 5 Imagerfluorescence imaging
Analyzer - Metabolism AnalysisAgilent Seahorse XFe96 Analyzer96 well plate metabolism analysis

Rhode Island INBRE Molecular Informatics Core (MIC)

(last updated 2022-03-18 09:49:03)
»See Rhode Island INBRE Molecular Informatics Core (MIC) website for more details

Contact: Christopher Hemme

Location: College of Pharmacy  »See on the Map

Affiliated Centers: IDeA Rhode Island IDeA Network of Biomedical Research Excellence (RI-INBRE) at University of Rhode Island, Rhode Island Consortium for Coastal Ecology Assessment Innovation and Modeling (RI C-AIM)

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Bioinformatics Analysis
Contact: Christopher Hemme
Bioinformatics and Data Science at the MIC
Service - BioinformaticsWe provide bioinformatics consultation and services to the Rhode Island INBRE community and to the general scientific community of Rhode Island. In addition to traditional bioinformatic services, our Core is expanding to 3D/VR/AR visualization services in conjunction with the URI 3D Visualization Laboratory. We are currently developing 3D/VR visualization apps for a variety of platforms including smartphones, Vive/SteamVR, and others. We also have access to the 3D printer at the URI 3D Visualization Core for printing of marcomolecules at a reasonable price.
Bioanalyzer
Contact: Janet Atoyan
Agilent Bioanalyzer 2100Provides fast and automated separation, sizing and quantification of DNA, RNA and proteins by miniaturized Lab-on-a-Chip electrophoresis
Disrupter
Contact: Janet Atoyan
Covaris S220 High Performance UltrasonicatorAutomated acoustic disruption and homogenization of cells and tissue samples using focused ultrasonic energy at 500 KHz. Performs DNA Shearing
DNA Sequencer
Contact: Janet Atoyan
Illumina MiSeq DNA NextGen SequencingPerforms clonal amplification, genomic DNA sequencing, and data analysis with base calling, alignment, variant calling, and reporting.
DNA Sequencer
Contact: Janet Atoyan
Applied Biosystems 3500xl Genetic AnalyzerDNA Sanger Sequencing & Fragment Analysis: Fluorescence-based instruments utilizing capillary electrophoresis for DNA sequencing and fragment analysis.
Fluorometer
Contact: Janet Atoyan
Invitrogen QubitFluorometer that uses fluorescent dyes bound to specific molecules to quantify DNA, RNA and proteins
Sample Preparation - Library Preparation System
Contact: Janet Atoyan
IntegenX Apollo 324 System NextGen Sequencing (NGS) Library Preparation SystemAutomated liquid handling instrument dedicated to the preparation of sample libraries for Next Generation Sequencing
PCR Thermal Cycler
Contact: Janet Atoyan
Roche LC480 qPCR SystemsQuantitative PCR (qPCR) instrument. Used for highly accurate qualitative and quantitative detection of nucleic acids and gene expression.

Rhode Island Nuclear Science Center

(last updated 2022-01-19 12:30:30)
»See Rhode Island Nuclear Science Center website for more details

Contact: Dr. Cameron Goodwin

Location: URI Bay Campus  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Reactor, Research and Test
Contact: Cameron Goodwin
2 Mega-Watt, light water cooled, pool type reactorNeutron and gamma irradiation and experimental set-up, as well as analysis

RIC - Fogarty Life Sciences Labs

(last updated 2024-03-28 13:33:53)

Contact: Dr. Rebeka Rand-Cyr

Location: Fogarty Life Science  »See on the Map

Affiliated Centers: Rhode Island Consortium for Coastal Ecology Assessment Innovation and Modeling (RI C-AIM), IDeA Rhode Island IDeA Network of Biomedical Research Excellence (RI-INBRE) at University of Rhode Island

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Sample Preparation - Knifemaker
Contact: Breea Govenar
LKB 7800 KnifemakerSlide/Sample Preparation
Microtome
Contact: Breea Govenar
Leica RM2165 Motorized Rotary MicrotomeSlide/Sample Preparation
Microtome
Contact: Breea Govenar
TBS Microtome plus CryostatSlide/Sample Preparation
Microscope
Contact: Breea Govenar
American Optical Series 10 Fluorescence MicrostartMicroscopy course
Microscope
Contact: Breea Govenar
Nikon E600 Epifluorescence with DIC/Phase and digital cameraResearch
Microscope
Contact: Breea Govenar
Olympus CKS41 Inverted MicroscopeTissue culture general use
Microscope
Contact: Breea Govenar
Olympus Compound Light MicroscopeGeneral use
Microscope
Contact: Breea Govenar
Olympus FluoView 1000 Laser Scanning Confocal MicroscopeResearch and Microscopy course
Microscope
Contact: Breea Govenar
Olympus Inverted Epifluorescence Microscope with digital cameraTissue culture/Research
Microscope
Contact: Breea Govenar
Zeiss SteREO discovery V8 Microscope with Digital CameraResearch
Aquatic System - Wet Lab / Aquarium room
Contact: Breea Govenar
Aquaria and related equipmentResearch
Autoclave
Contact: Breea Govenar
AutoclaveMicrobiology/Research
Biological Safety Cabinet
Contact: Breea Govenar
Labconco class II Biological Safety CabinetUsed for tissue culture
Biological Safety Cabinet
Contact: Breea Govenar
Sterile laminar flow hoodMicrobiology prep
Centrifuge
Contact: Breea Govenar
Eppendorf 5810R Refrigerated CentrifugeUsed for tissue culture
Centrifuge
Contact: Breea Govenar
Sorvall Discovery M120SE Mini UltracentrifugeResearch/Cell fractionation
Centrifuge
Contact: Breea Govenar
Sorvall Superspeed RC2 CentrifugeGeneral use
Centrifuge
Contact: Breea Govenar
Sorvall Superspeed RC5 Plus CentrifugeResearch
Centrifuge
Contact: Breea Govenar
Thermo IEC Centra CL3R Refrigerated CentrifugeGenetics and Cell & Molec courses
Cold Room
Contact: Breea Govenar
Walk-In Cold RoomLarge cold room for experimentation and storage
Dishwasher
Contact: Breea Govenar
DishwasherMicrobiology/Research
Disrupter
Contact: Breea Govenar
French Pressure Cell PressResearch
Disrupter
Contact: Breea Govenar
Polytron Tissue GrinderSlide/Sample Preparation
Disrupter
Contact: Breea Govenar
SonicatorGeneral use and research
Disrupter
Contact: Breea Govenar
Sonicator with cupResearch and graduate courses
Electroporation System
Contact: Breea Govenar
Bio-Rad Micropulser ElectroporatorResearch
Sample Preparation - Freeze Dry System
Contact: Breea Govenar
ATMO VAC 5009 freeze dryerSlide/Sample Preparation
Biospecimen Banking - Freezer
Contact: Breea Govenar
Thermolyne Liquid Nitrogen cryogenic storage systemCell storage
Biospecimen Banking - Freezer
Contact: Breea Govenar
Ultralow FreezerUsed for freezing biological samples, 6 units
Imaging System - Gel Imager
Contact: Breea Govenar
InGenius Syngene Gel Documentation SystemResearch
Ice Machine
Contact: Breea Govenar
Ice MachineGeneral use
Imaging System - Dark Room
Contact: Breea Govenar
Imaging System - Dark RoomGel imaging and analysis
Incubator
Contact: Breea Govenar
Non CO2 IncubatorUsed for tissue culture
Incubator
Contact: Breea Govenar
Thermo CO2 Incubators Used for tissue culture, 2 units
Incubator
Contact: Breea Govenar
Refrigerated IncubatorUsed for tissue culture
Laboratory - Tissue Culture
Contact: Breea Govenar
Tissue Culture RoomA room outfitted with tissue culture instrumentation
Microplate Reader
Contact: Breea Govenar
Lenovo Automated Plate ReaderResearch
Microplate Reader
Contact: Breea Govenar
Thermo Labsystems Multiskan MMCC/340 plate readerResearch
Sample Preparation - Oven
Contact: Breea Govenar
Drying OvenGeneral use
PCR Thermal Cycler
Contact: Breea Govenar
Bio-Rad IQS Real time PCR thermocyclerResearch
PCR Thermal Cycler
Contact: Breea Govenar
Eppendorf Gradient Mastercycler PCR instrumentation, 2 units
Incubator - Shaker
Contact: Breea Govenar
Incubator/ShakersMultiple units
Spectrophotometer
Contact: Breea Govenar
BioRad SmartSpec PlusResearch
Spectrophotometer
Contact: Breea Govenar
Eppendorf BiophotometerGectrophotometerseral use
Spectrophotometer
Contact: Breea Govenar
Spectronic 21 D UV/VISResearch
Spectrophotometer
Contact: Breea Govenar
Therm Spectronic Genesys UV/VIS Scanning Research, 6 units
Spectrophotometer
Contact: Breea Govenar
Thermo Scientific NanoDrop ND-1000 UV/VIS, 2 units
Water Purification System
Contact: Breea Govenar
Barnstead Still Water PurifierGeneral use for teaching labs
Water Purification System
Contact: Breea Govenar
Millipore DirectQ (X2)Tissue culture
Water Purification System
Contact: Breea Govenar
Millipore NanoPure Diamond 2nd floor research use
Imaging System - X-ray Film
Contact: Breea Govenar
X-ray film processorBlot imaging

RISD Media Resources

(last updated 2022-03-18 10:42:18)
»See RISD Media Resources website for more details

Contact: David Chandler

Location: RISD Auditorium  »See on the Map

Affiliated Centers: Rhode Island Consortium for Coastal Ecology Assessment Innovation and Modeling (RI C-AIM)

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Imaging System - Audio|VisualKodak zi 10 Video Camera (8 units)Portable HD pocket camcorder, batteries, adaptor cables, cases, accessories
Imaging System - Audio|VisualH4N ZOOM Audio Recorder (5 Units)High performance portable digital audio recorder, batteries, adaptor cables, cases, accessories
Imaging System - Audio|VisualZOOM Q3 Video Camera (7 Units)Portable palm camcorder, batteries, adaptor cables, cases, accessories
Imaging System - Audio|VisualEPS-SonyPMWEX1R-01 (2 Units)High performance HD CMOS solid state video camera, batteries, portable hard drive, adaptor cables, cases, studio lighting equipment, accessories

RISD Nature Lab

(last updated 2024-04-01 10:11:11)
»See RISD Nature Lab website for more details

Contact: Georgia Rhodes

Location: Waterman Building  »See on the Map

Affiliated Centers: Rhode Island Consortium for Coastal Ecology Assessment Innovation and Modeling (RI C-AIM)

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Aquatic SystemMarine Ecological Habitats Closed-System Aquarium560 L closed-system recirculating marine holding tanks with temperature control (2 units)
MicroscopePhenom G2Pro Scanning Electron Microscope (SEM)Desktop Scanning Electron Microscope with ProSuite tiling and remote access software
MicroscopeOlympus SZX16 StereomicroscopeLight microscope with 12.5 MP Jenoptik progressive scan camera, computer workstation, graphics and imaging software
MicroscopeOlympus IX51 Inverted Fluorescent/Brightfield MicroscopeFluorescence/brightfield microscope with 12.5 MP Jenoptik progressive scan camera, computer workstation, graphics and imaging software
MicroscopeOlympus CH30 Upright Light Microscope Upright light microscope with 5 MP Jenoptik digital camera, Canon Vixia HFS20 HD video camera, computer workstation, graphics and imaging software (2 units)
MicroscopeOlympus SZ30 Stereomicroscope Light microscope with LED illuminator (24 units)
GPS UnitTrimble Geo 7x Subfoot GPSSurvey-grade high resolution handheld GPS unit with sub-foot accuracy
GPS UnitGarmin eTrex 30 (10 units)Mapping grade gps unit for student use
Imaging System - Videocamera - High SpeedEdgertronic - monochromeHigh speed videocamera for capturing slow motion footage. Capable of Resolutions up to 1280x1024, frame rates at lower resolution up to nearly 18,000 fps
Imaging System - Videocamera - High SpeedEdgertronic - colorHigh speed videocamera for capturing slow motion footage. Capable of Resolutions up to 1280x1024, frame rates at lower resolution up to nearly 18,000 fps
Imaging System - 3D ScannerArtec SpiderHigh resolution 3D scanner designed specifically for CAD users
Imaging System - 3D ScannerStructure SensorScanners (3) for use with iPad Air, capable of 3D scanning objects and entire rooms
Workstation, Computer Geographic Information System (GIS)EPC workstations (3)Computer workstations outfitted with ArcGIS, auto cad and the full adobe creative suite

Roger Williams Medical Center Resources

(last updated 2022-03-18 12:47:06)
»See Roger Williams Medical Center Resources website for more details

Contact: John W. Morgan, Ph.D.

Location: Roger Williams Medical Center  »See on the Map

Affiliated Centers: Roger Williams Medical Center Core Research Facilities

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Flow Cytometry Core
Contact:
Flow Cytometry Core Webpage
Flow Cytometry and Cell SortingThe Flow Cytometry Core facility is dedicated to advancing research projects requiring cell sorting and/or analysis of cell populations by flow cytometry. The core offers training on and access to shared use instrumentation for analytical flow cytometry, services for fluorescence activated cell sorting (FACS) as well as technical consultation and support on experimental design, execution, and data analysis.
Imaging Core
Imaging Core Webpage
Zeiss LSM 700 confocal, Zeiss Axioplan 2 optical, Zeiss Axiovert 200M optical, IVIS Model 100The Imaging Core facility provides technical and logistical access for fixed and live cell fluorescence imaging via visual and digital fluorescent microscopes. This core also offers the ability to visualize fluorescent and bioluminescent markers in live animals via an IVIS imager.
Molecular Core
Molecular Core Webpage
Applied Biosystem PRISM 7000 Sequence Detection System, Bio-Rad ChemiDoc Molecular Imager, Bio-Rad CFX96 Touch Real-Time PCR Detection SystemThe molecular core offers the capability of performing PCR analysis, quantitative real-time PCR analysis, and digital gel documentation.
Cell Immunotherapy and Gene Therapy (CITGT) Good Manufacturing Practice (GMP) Facility
Contact: Steven C. Katz, MD, FACS
(GMP) Facility Webpage
Services and EquipmentThe Cell Immunotherapy and Gene Therapy GMP facility supports the manufacture of investigational new drug (IND) products for principal investigators under FDA rules and regulations. 
Tissue Bank Core
Tissue Bank Core Webpage
Biospecimen Banking - Tissue Banking and Specimen accessThe Tissue Repository Core (TRC) is designed to facilitate translational cancer research by procuring and storing diseased and normal control tissues, with the associated clinical data, for RWMC investigators and outside clients.
Animal Services Core
Animal Services Core Webpage
Husbandry, Surgical Procedures and InjectionsThe Animal Care Facility is fully maintained, certified, and is supervised by a certified veterinarian, and our Office of Research Administration.

RWU Lab Spaces

(last updated 2021-12-01 13:19:32)

Contact: Nancy Breen

Location: Marine and Natural Sciences  »See on the Map

Affiliated Centers: Rhode Island Consortium for Coastal Ecology Assessment Innovation and Modeling (RI C-AIM), IDeA Rhode Island IDeA Network of Biomedical Research Excellence (RI-INBRE) at University of Rhode Island

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Fluorescence Activated Cell Sorter (FACS)
Contact: Marcie Marston
Millipore Guava easyCyte Flow CytometerCell sorting and analysis
Gas Chromatograph - Mass Spectrometer (GC - MS)
Contact: Nancy Breen
Agilent 5890 Gas Chromatograph - Mass Spectrometer (GC - MS) wth Mass Selective Detetor (MSD)GC MS for teaching and research
High Performance Liquid Chromatography (HPLC)
Contact: Nancy Breen
Waters 2695 High Performance Liquid Chromatograph-MS / ZQ Micromass Mass SpectrometerLC - MS for teaching and research
Gas Chromatograph
Contact: Nancy Breen
Agilent 7890 Gas Chromatography with DB-23 columnGC for fatty acid analysis

Single Cell Technologies Shared Resources (Legorreta Cancer Center at Brown University)

(last updated 2023-06-09 15:29:29)
»See Single Cell Technologies Shared Resources (Legorreta Cancer Center at Brown University) website for more details

Contact: Paul Bertone, PhD

Affiliated Centers: Legorreta Cancer Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Training and Technical AssistanceServiceAdvise investigators with experimental design for single cell analysis including implementation of technical plans as well as analysis of results. Advise on single cell genomics, RNA-seq, ChIP-seq and bioinformatic analysis. Provide support for grant submissions.

Statistics and Data Management Core

(last updated 2023-03-16 15:14:50)

Contact: Jennifer Friedman, MD, PhD

Location: 55 Claverick Street  »See on the Map

Affiliated Centers: Center for International Health Research

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Technical Assistance - Statistics and Data Management
Contact: Sangshin Park, PhD
ServiceThis Core provides consultation and assistance in managing and analyzing research data, such as the large datasets, and in linking these data with clinical predictors and outcomes collected in the field. The Core also performs more sophisticated data analytic approaches, including hierarchical, repeated measures modeling and Principal Components Analysis.

Structural Biology Facility

(last updated 2022-01-20 09:22:41)
»See Structural Biology Facility website for more details

Contact: Mandar T Naik, PhD

Location: Laboratories for Molecular Medicine  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Nuclear Magnetic Resonance (NMR) SpectrometerBruker 500 Avance IIAn NMR spectrometer optimized for studying proteins in solution. This spectrometer is most useful for tracking binding interactions, measuring dynamic properties of proteins, and assigning protein resonances. Capable of using 5 mm and 3 mm tubes. Also suitable for proton NMR of small molecules and natural products.
Nuclear Magnetic Resonance (NMR) SpectrometerBruker 850 MHz Avance III HD, with TCI cryoprobeAn NMR spectrometer optimized for studying proteins in solution. This spectrometer is ideal for determining protein structures and measuring protein dynamics. Its extreme sensitivity allows studies on otherwise intractable samples. Capable of using 5 mm, 3 mm, and shaped NMR tubes. Also suitable for proton NMR of small molecules and natural products
X-Ray Diffraction SystemRigaku ACTOR robot and Saturn 944 HG CCDAn instrument useful for obtaining X-ray diffraction patterns of proteins and other biomacromolecules under cryogenic or room-temperature conditions. Rapid screening and sorting of up to 80 candidate crystals is possible.
Nuclear Magnetic Resonance (NMR) SpectrometerBruker AVANCE III HD 600 MHz High Performance Digital NMR SpectrometerBruker NEO 600 MHz NMR spectrometer for high resolution solution-state protein NMR experiments 4 RF channels, triple-resonance (1H-13C-15N) inverse cryoprobe with cooled 1H, 13C and 15N preamplifiers.

Three Dimensional (3D) Facility for Biomedical Sciences: Animation, Visualization and Printing

(last updated 2023-03-16 15:22:18)
»See Three Dimensional (3D) Facility for Biomedical Sciences: Animation, Visualization and Printing website for more details

Contact: Bongsup Cho, Ph.D.

Location: Pharmacy Building  »See on the Map

Affiliated Centers: IDeA Rhode Island IDeA Network of Biomedical Research Excellence (RI-INBRE) at University of Rhode Island

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Imaging System - 3D PrinterZ650 3D System/Z-corpProduces realistic color (Powder Based) models without paint to better evaluate the look, feel, and style of product designs. Five print heads provide the widest range of accurate colors, including true black and improved color consistency from part to part. 3D print text labels or images can be directly applied onto printed models.

Translational Oncology Shared Resources (Legorreta Cancer Center at Brown University)

(last updated 2023-06-09 15:30:00)
»See Translational Oncology Shared Resources (Legorreta Cancer Center at Brown University) website for more details

Contact: Attila Seyhan, PhD

Affiliated Centers: Legorreta Cancer Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Training and Technical AssistanceServiceAdvise investigators on study design leading to translational clinical protocols. For prioritized studies, provide assistance with clinical protocol preparation as well as NIH, Industry or Foundation grant submissions to secure funding for the research.

Tumor Tissue Shared Resources (Cancer Center at Brown University)

(last updated 2023-06-09 15:30:22)
»See Tumor Tissue Shared Resources (Cancer Center at Brown University) website for more details

Contact: Murray Resnick, MD, PhD

Affiliated Centers: Legorreta Cancer Center

Instrument/Service/Resource UnitManufacturer/DescriptionFunction

URI Sources, Transport, Exposure & Effects of PFAS (STEEP)

(last updated 2021-05-13 08:38:12)
»See URI Sources, Transport, Exposure & Effects of PFAS (STEEP) website for more details

Contact: Simon Vojta

Location: Narragansett Bay Campus - Graduate School of Oceanography

Affiliated Centers: Sources, Transport, Exposure and Effects of PFAS (STEEP) Superfund Research Program

Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Mass Spectrometer
Contact: Simon Vojta
Mass Spectrometer Available to Researchers
SCIEX X500R QTOF PLATFORM coupled to an EXION LC AC SYSTEMA tandem (MS/MS) mass spectrometer combining a quadrupole and a time-of-flight analyzer allows collecting high-resolution MS and MRM spectra. The instrument is suitable for both quantitative analysis as well as non-targeted approach and operates under SCIEX OS software. The collected data are evaluated using an independent processing station (SCIEX Alpha Workstation 2020) equipped with SCIEX OS-Q software

X-ray Reconstruction of Moving Morphology Facility (XROMM)

(last updated 2022-03-18 08:58:13)
»See X-ray Reconstruction of Moving Morphology Facility (XROMM) website for more details

Contact: Beth Brainerd, PhD

Location: BioMedical Center Building  »See on the Map
Instrument/Service/Resource UnitManufacturer/DescriptionFunction
Imaging System - Computed Tomography (CT) Scanner Animage Fidex VeterinaryVeterinary CT Scanner designed for animals in the size range from rats to dogs. In vivo scanning of anesthetized animals is possible.
Imaging System - GE Lightspeed 16 Slice CT ScannerGE
Imaging System - Videoradiography Room
XROMM
Imaging Systems and ServicesCustom designed biplanar videoradiography system for XROMM studies of human and animal subjects.
Imaging system X-Ray Fluoroscopes
Contact:
XROMM
Radiological Imaging Mobile C-Arm X-ray Two retrofitted with 30-cm image intensifiers and high-speed video cameras for measuring accurate 3D skeletal kinematics of small to medium-sized animals.
Imaging System - MicroComputed Tomography (uCT) Scanner Bruker BioSpinSkyScan 1276 in vivo microCT scanner for small animals (mouse to rat size)